Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0277 ATGTCTCTTTCGCTGATTTCCTCGCCCCACACTCCCCGATTCCTCGTCGCTTTTGTCCTTTTCTGTTTCTTTCAACGCCGTTCAAAAATTCCCACCTCCATTTTCCACGCAATAACTCGGCGATTTCGCGGGACAGACAGTGACCAAAGCGGGACAAGCGGACGAGCAAGTTGTGCACGCAGGTGTAAGACGAGTGACGTCAGCGCTAAACCAGAATCAGTCGCCGGAGGACAAGATCACGGCTACGATATGTACGGGCAAACTACTTACGAATCGGATTTAACCTTGTTGGAGTCAATTCGACGCCACTTGCTGGATGACTCCGAAATGCGATTCGCGGATACGGTTACTTCTTCGGGTTCCGGTCCGGTTTACAATCGGAGCTCCAGTTTCAGCAGCTTGTACCCGTGCTTGACGGATAATTGGGGCGAATTGCCGCTTAAAGAGGATGATTCCGAAGACATGGTGCTCTACGGCGTTCTCCGCGACGCCGTCAGCGTCGGATGGGTGCCGTCCCTCGATGCGGGTTCACCTGAGAGTATATCTTCGGGTTTCGCTCCGACCGTCACGGTGAAATCGGAGCCTGATGTGATGCCGGCGATGGAATCCCCCCCGGCGATTAAGCAAGAGATGGTGGTAGCCGTCCCGGCGGCTGTTCCGGCGAAGGGGAAGCATTACCGAGGCGTACGGCAACGGCCGTGGGGGAAATTCGCGGCGGAGATACGTGACCCGGCTAAGAACGGGGCTCGGGTTTGGCTCGGAACGTTCGAGACGGCTGAGGATGCGGCTCTGGCATACGACCGAGCCGCGTACAGGATGCGCGGCTCGCGGGCTCTGCTGAACTTCCCGCTGAGAGTGAACTCGGGCGAACCCGACCCGGTGCGAGTGACCTCGAAGAGGTCATCCCCAGAGCGATCGTCGTCGTCGTCGTCGGACAGTGGGGCGTCGCCGAAGAGAAGGAAGAAGGTGGTGGTGGGGACAACCTCCGAGGCGAGCACGGTGGTGACAGCTCAAGTGGAATTGAAAACGGGGCAAGTGGGAAGCCAAGTGGGAACGACATCATGTGTACGTGGAGGACAGTTATTGGTTAGCTAA 1095 0.5744 MSLSLISSPHTPRFLVAFVLFCFFQRRSKIPTSIFHAITRRFRGTDSDQSGTSGRASCARRCKTSDVSAKPESVAGGQDHGYDMYGQTTYESDLTLLESIRRHLLDDSEMRFADTVTSSGSGPVYNRSSSFSSLYPCLTDNWGELPLKEDDSEDMVLYGVLRDAVSVGWVPSLDAGSPESISSGFAPTVTVKSEPDVMPAMESPPAIKQEMVVAVPAAVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPERSSSSSSDSGASPKRRKKVVVGTTSEASTVVTAQVELKTGQVGSQVGTTSCVRGGQLLVS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0277 364 ProSiteProfiles AP2/ERF domain profile. 225 283 IPR001471 GO:0003700|GO:0006355
Dere13g0277 364 SUPERFAMILY DNA-binding domain 225 285 IPR016177 GO:0003677
Dere13g0277 364 PANTHER DNA-BINDING DOMAIN 202 319 IPR044808 GO:0003700|GO:0009873
Dere13g0277 364 Pfam AP2 domain 225 275 IPR001471 GO:0003700|GO:0006355
Dere13g0277 364 SMART rav1_2 225 289 IPR001471 GO:0003700|GO:0006355
Dere13g0277 364 MobiDBLite consensus disorder prediction 300 314 - -
Dere13g0277 364 Gene3D AP2/ERF domain 224 286 IPR036955 GO:0003700|GO:0006355
Dere13g0277 364 FunFam Ethylene-responsive transcription factor 2 224 284 - -
Dere13g0277 364 CDD AP2 224 283 IPR001471 GO:0003700|GO:0006355
Dere13g0277 364 PRINTS Ethylene responsive element binding protein signature 249 265 IPR001471 GO:0003700|GO:0006355
Dere13g0277 364 PRINTS Ethylene responsive element binding protein signature 226 237 IPR001471 GO:0003700|GO:0006355
Dere13g0277 364 MobiDBLite consensus disorder prediction 286 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0277 Dere-ChrDere13 3969802 3971228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0277 91 344 AP2-EREBP Transcription Factor Family AT4G17500 57.955 2.20e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere13g0277 AP2 1.8e-14 CL0081