LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g0276	ATGTCGTTGACGCTACAATTGTCTCGAACTCGCTCCGAATCAAACGGCACAGAAGTTGTAGGACAAGATGAGGTTTCGGCCCTCAATCGCATCAAATTGCATCTTCTAGGTGAACTGTCTCCAGTGGGGACTTTTTCGACTGGCCTTACCAGCTCAACGAGCGATGCTACCCAACAACTCTGGTTGGGCGAACCAAACGTAGCAATTTCCAGCTCTGACTCTGAATCTCTCCGTTCCGAATCATCGAATTCTGACTCCTCTGTCACTGTATCCGACTACTTTACTGAATTATTCGACTTCCCAACCAACTCCGTTAATCTATATGAATTTGAGTCCAAAAATCAAGTGATTGACCTCTCAACGCCCAAATCCGAATCCGAAGCTTCGCAATTCAACAACAATTTTTCCAAATTCGAATCAAACTCACAGGCAACGTCAAACCCTAGTTCAAATTCCAGCAGTTGCACGTTCGAGTTTCAACCTAGACCCCAAACCGTCGAGAAGAAATCTCAACTAAATCGGAAACCATCGTTGCAAATCACGCTACCAAAGAAAACCGAGTGGATCCAATTTGGAAACCCGGATCAACAACAGGAAGTTCCACAAGAGTTCGTGCAGAATAATTCAAATCTCGAAGAGAAAAAGCACTACAGAGGGGTCCGACAGAGGCCGTGGGGCAAGTTCGCAGCCGAGATTCGCGACCCGAACAAGCGTGGATCTAGGGTGTGGCTTGGAACATTCGACACGGCCATCGAAGCCGCCAAAGCCTACGACCGAGCTGCGTTTAAGCTCCGCGGCTCCAAAGCCATACTCAATTTCCCTCTGCAAGTAGGGACGTCCGGCTCAACGGAGGGCGTGGAGGAGAGAAAACGCCGGCGAGAAGATAATGAGGCGGAGACGGTAGTGGAAGTAAAGGCAGTGGTGAAGAAAGAAAAAACGGAGGAATCTGACGCGAGAAGCATAAGGGACATTCCGTTAACGCCGTCCACTTGGACGGGGTTTTGGGAGAATGATTTGAAGGACATTTTCCCTGTCCCGCCGTTATCACCGTTATCTCCACACCCACCTTTGGGTTATCCACAACTTATGGTTGTATAA	1098	0.4854	MSLTLQLSRTRSESNGTEVVGQDEVSALNRIKLHLLGELSPVGTFSTGLTSSTSDATQQLWLGEPNVAISSSDSESLRSESSNSDSSVTVSDYFTELFDFPTNSVNLYEFESKNQVIDLSTPKSESEASQFNNNFSKFESNSQATSNPSSNSSSCTFEFQPRPQTVEKKSQLNRKPSLQITLPKKTEWIQFGNPDQQQEVPQEFVQNNSNLEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLQVGTSGSTEGVEERKRRREDNEAETVVEVKAVVKKEKTEESDARSIRDIPLTPSTWTGFWENDLKDIFPVPPLSPLSPHPPLGYPQLMVV	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g0276	365	ProSiteProfiles	AP2/ERF domain profile.	216	274	IPR001471	GO:0003700\|GO:0006355
	Dere13g0276	365	Pfam	AP2 domain	216	266	IPR001471	GO:0003700\|GO:0006355
	Dere13g0276	365	FunFam	Ethylene-responsive transcription factor 2	215	276	-	-
	Dere13g0276	365	CDD	AP2	215	274	IPR001471	GO:0003700\|GO:0006355
	Dere13g0276	365	PANTHER	DNA-BINDING DOMAIN	139	305	IPR044808	GO:0003700\|GO:0009873
	Dere13g0276	365	SMART	rav1_2	216	280	IPR001471	GO:0003700\|GO:0006355
	Dere13g0276	365	MobiDBLite	consensus disorder prediction	138	176	-	-
	Dere13g0276	365	SUPERFAMILY	DNA-binding domain	216	276	IPR016177	GO:0003677
	Dere13g0276	365	Gene3D	AP2/ERF domain	215	277	IPR036955	GO:0003700\|GO:0006355
	Dere13g0276	365	PRINTS	Ethylene responsive element binding protein signature	256	276	IPR001471	GO:0003700\|GO:0006355
	Dere13g0276	365	PRINTS	Ethylene responsive element binding protein signature	217	228	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g0276	Dere-ChrDere13	3958829	3960210	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g0276	23	365	AP2-EREBP Transcription Factor Family	AT5G47230	45.845	1.01e-70	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere13g0276		AP2	5e-16	CL0081