Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0270 ATGCATATGAAGGGTGGAGTGGTGGAAGGAGACGAAGAAAAATCATATTTAGGGGATGGTGTTATTGGCGGGGCAAGCTTAGTTGTGACTGATGCGAAAAGGGTTCTTGTTGGAGCAGGGGCTCGTGTGCTTTTCTATCCCACTCTGCTTTACAATGTCCTTAGGAATAGGTTTGAGGCCGAGTTTCGGTGGTGGGATAAAGTTGACGAGTTCGTATTATTAGGTGCTGTTCCCTTCCCAATTGATGTTTCCCGCTTAAGGGAGCTGGGCGTTCGTGGAGTCATCACATTGAATGAGTCATATGAGACATTGGTTCCAACCACACTATATCGTGCTCATGGAATTGATCATTTGGTTATTCCTACTAGAGATTACTGCTTTGCACCATCATTACGTGACATATGCTGTGCTGTGAACTTCATACACGAAAGTGCATTGTCTGGGCGAACTACATATGTCCACTGCAAAGCTGGGCGTGGTCGCAGCACAACTATTGTTATCTGTTACCTGGTACATCACAAGATGATGACGCCTGATGCTGCATATGATTATATAAAGTCAATTCGGCCAAGGGTTCTTCTTGCTTCTTCTCAGTGGCAAGCTGTTCAGGAATATTACCACCTCATGGTGAAGAGGACTGTTGCCTATCCTCCCACAGCCAAATTAGTATTGAACAAATCTGAGGCAGCTGCAGCTTCAAAAGACCTTGTGACATTTGACGATGGTTCTGTAGTTGTGGTAACACAGTCAGATATTGAAGGATACGACCCAAGTATCCAATCAGGTGCTATGCCAATGGAGATATGGGCAGATCTAAGTGTTTTTTATGGTGTTCGAGTTGCTGGACAGGCAGCATTGGCAGGAATATCCTGGCTCAGGCTGCGATATCTGTTGCGATCGAAGATTTCTACAAACAAAATGAGCAGGGGGAGCAGCTGCTCAATCAGAAATGATCACTTGGGAGGCGTTAGCGTTGATATCCATGTGTATTAA 993 0.4512 MHMKGGVVEGDEEKSYLGDGVIGGASLVVTDAKRVLVGAGARVLFYPTLLYNVLRNRFEAEFRWWDKVDEFVLLGAVPFPIDVSRLRELGVRGVITLNESYETLVPTTLYRAHGIDHLVIPTRDYCFAPSLRDICCAVNFIHESALSGRTTYVHCKAGRGRSTTIVICYLVHHKMMTPDAAYDYIKSIRPRVLLASSQWQAVQEYYHLMVKRTVAYPPTAKLVLNKSEAAAASKDLVTFDDGSVVVVTQSDIEGYDPSIQSGAMPMEIWADLSVFYGVRVAGQAALAGISWLRLRYLLRSKISTNKMSRGSSCSIRNDHLGGVSVDIHVY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0270 330 CDD PTPMT1 64 206 IPR044596 GO:0004721
Dere13g0270 330 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 24 289 - -
Dere13g0270 330 Pfam Dual specificity phosphatase, catalytic domain 104 206 IPR000340 GO:0008138|GO:0016311
Dere13g0270 330 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 57 211 IPR029021 -
Dere13g0270 330 SMART dsp_5 67 208 IPR020422 GO:0006470|GO:0008138
Dere13g0270 330 Gene3D Protein tyrosine phosphatase superfamily 64 214 IPR029021 -
Dere13g0270 330 ProSitePatterns Tyrosine specific protein phosphatases active site. 153 163 IPR016130 GO:0016311|GO:0016791
Dere13g0270 330 FunFam Dual specificity phosphatase domain protein 64 211 - -
Dere13g0270 330 ProSiteProfiles Dual specificity protein phosphatase domain profile. 64 211 IPR020422 GO:0006470|GO:0008138
Dere13g0270 330 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 132 200 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0270 Dere-ChrDere13 3876332 3878969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0270 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 54.701 8.08e-122 352