Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0267 ATGCCGTCTCCTTCTGCTTCTATTCCACACAACAAACCCTCCTGGAAGGAGGCTCTACCTTCCTCAGATCGATATTCTGAAGCATGCAGAGGCGAAACTCGGTCATTTCTCCAAGGAATCGACGTGAATCGATTGCCTTCGGAGTTCGATTGCGAGGATGAGGCGGGGGTTTCGTCTCCAAACAGCACGATTTCGAGCGTGAGCGGTAAGCGATGCGAGAGGGAGGCCAACAGCTGCGAAGAGCACGACATGGACAGAGCTTGTTCTCGAGGAATCAGTGATGAAGAAGACAACGAAACGTCCAGGAAGAAGCTCAGGCTGTCCAAAGATCAGTCAGCTATTCTGGAAGAGAGCTTCAAAGAGCACAATACTCTTAACCCCAAGCAAAAGTTGGCACTGGCAAAGCAGCTAGGTCTTCGACCAAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAGCAAACAGAGGTGGACTGCGAGTTCTTGAAACGGTGTTGCGAGAATCTGACGGAGGAGAATAGGCGGTTGCAGAAAGAGGTGCATGAGCTTAGAGCACTGAAACTTTCCCCACAGCTGTACATGCAGATGACCCCACCCACTACCCTCACCATGTGCCCATCGTGTGAGAGGCTGGCTGACAGGCCCATACCCATGGGCCCATGGGCCGTATCTGCTCATATTTCTCGCAAGCCCTTCGATGCCCTTCATCATCCCAGATCATGA 738 0.5217 MPSPSASIPHNKPSWKEALPSSDRYSEACRGETRSFLQGIDVNRLPSEFDCEDEAGVSSPNSTISSVSGKRCEREANSCEEHDMDRACSRGISDEEDNETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVHELRALKLSPQLYMQMTPPTTLTMCPSCERLADRPIPMGPWAVSAHISRKPFDALHHPRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0267 245 CDD homeodomain 102 159 IPR001356 GO:0003677
Dere13g0267 245 PRINTS Lambda-repressor HTH signature 138 154 IPR000047 GO:0003677
Dere13g0267 245 PRINTS Lambda-repressor HTH signature 129 138 IPR000047 GO:0003677
Dere13g0267 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 218 - -
Dere13g0267 245 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677
Dere13g0267 245 Coils Coil 157 191 - -
Dere13g0267 245 MobiDBLite consensus disorder prediction 1 27 - -
Dere13g0267 245 SUPERFAMILY Homeodomain-like 90 159 IPR009057 -
Dere13g0267 245 SMART halz 158 201 IPR003106 GO:0006355|GO:0043565
Dere13g0267 245 SMART HOX_1 100 162 IPR001356 GO:0003677
Dere13g0267 245 FunFam Homeobox-leucine zipper protein 18 89 163 - -
Dere13g0267 245 MobiDBLite consensus disorder prediction 83 102 - -
Dere13g0267 245 Gene3D - 106 156 - -
Dere13g0267 245 Pfam Homeodomain 102 156 IPR001356 GO:0003677
Dere13g0267 245 Pfam HD-ZIP protein N terminus 3 75 IPR006712 GO:0005634
Dere13g0267 245 Pfam Homeobox associated leucine zipper 158 192 IPR003106 GO:0006355|GO:0043565
Dere13g0267 245 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0267 Dere-ChrDere13 3864094 3865283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0267 14 245 Homeobox Transcription Factor Family AT4G16780 66.397 6.63e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere13g0267 HD-ZIP_N 1.3e-22 No_clan