Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0259 ATGGAAGCTCAACACCATCAAGCTGTTCTTTTAGACACTGAACTTCAACCAACCACTCCTTTCTCGTTCACCATTACTTCTTCTTCTTCTTCTTCTTCTGCTTCTTCATTCTCTTCCACAGCGATTCAGAAGCAGGTGAAGAAGAAAGACATGGAGGGGAAGCACCCTACGTATAGAGGAGTACGTATGCGTCAATGGGGAAAATGGGTTTCAGAGATTAGAGAGCCTAGGAAGAAATCCAGAATCTGGCTCGGCACTTTTCCTACTCCAGAGATGGCGGCTCGAGCTCACGACGTGGCGGCGCTGACCATCAAGGGCAGCTCGGCTTTCCTCAACTTCCCGGAGCTAGCGGCGCAGCTCCCCCGTCCCGCCAGTAATTCCCCAAAGGACATCCAAGCTGCCGCCGCCAAGGCAGCCGCTCCCGATTACCGGATAGGGTGTACAGAAGTTGAAGCTGAAGCGGAGTCCGAGGCGAGCCAAGCCGACACTCACGGATCGTCGAATTCGCCGTTGACGGACGACGACGACACGTTCTTCGACCTCCCTGATCTCTTAAATCACGGCGTCGATGAGTTTCATTACTCCTCCTTGTGGCTCGTAGCCGGCGCCGAATACAGAGACTCATCTTTCCGGCTTGATGAGCCTTTTCTCTGGGACTCTTACTAG 666 0.533 MEAQHHQAVLLDTELQPTTPFSFTITSSSSSSSASSFSSTAIQKQVKKKDMEGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALTIKGSSAFLNFPELAAQLPRPASNSPKDIQAAAAKAAAPDYRIGCTEVEAEAESEASQADTHGSSNSPLTDDDDTFFDLPDLLNHGVDEFHYSSLWLVAGAEYRDSSFRLDEPFLWDSY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0259 221 MobiDBLite consensus disorder prediction 151 173 - -
Dere13g0259 221 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Dere13g0259 221 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Dere13g0259 221 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Dere13g0259 221 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Dere13g0259 221 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Dere13g0259 221 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Dere13g0259 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 33 187 - -
Dere13g0259 221 MobiDBLite consensus disorder prediction 27 44 - -
Dere13g0259 221 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Dere13g0259 221 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Dere13g0259 221 MobiDBLite consensus disorder prediction 159 173 - -
Dere13g0259 221 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Dere13g0259 221 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0259 Dere-ChrDere13 3732363 3733028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0259 47 217 AP2-EREBP Transcription Factor Family AT2G44940 51.208 8.77e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere13g0259 AP2 1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0423 09 7054707 7055363 Dere13g0259 13 3732363 3733028 CCT