Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0257 ATGATGGCACAGAAGAGCAAGACTGAGTCATCCACTAGGAAATATATGAACAGAGGAGCTTGGACCCCTGAAGAAGATCGAAAGCTAGCACAATGCATTGAAGCTCACGGAGCTAGGAGGTGGAAGACTATTGCCATCAAATCAGGTTTGAACAGATGCGGCAAGAGTTGCAGGCTGCGATGGCTGAACTATCTCAGGCCTAACATCAAACGAGGCAACATTTCCCTTGAAGAAGAGGACTTGATTCTTAGGCTTCACAAACTCCTCGGAAATAGGTGGTCGTTGATAGCTGGAAGGCTTCCGGGACGAACAGACAATGAAATTAAAAACTATTGGAATTCTCATTTGTGCAAAAAAGTCAATCCTGAAGAGAAAAAACCAAAAACTTCAACCTCACGAGAATGCACGCCCCGGAATACCTGCGATAGTGCCCTTGTAGAGAATGAGGACGCCATTCATGGACATGGAAGTGGGAACTCAGAAATTGGCTTCGATGTGAACGAGTTCTTTGACTTCTCCACCAAAGAAGGATCGTATGAGTTGGATTGGGTGAACAAGTACCTAGAACTAGATGAATTCCCAGGGAGCATAGAGTATAGGGAAGTAATGGGGAATCTTGATCCTAAAGATCCAAGAGAATTTTAG 645 0.445 MMAQKSKTESSTRKYMNRGAWTPEEDRKLAQCIEAHGARRWKTIAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISLEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNPEEKKPKTSTSRECTPRNTCDSALVENEDAIHGHGSGNSEIGFDVNEFFDFSTKEGSYELDWVNKYLELDEFPGSIEYREVMGNLDPKDPREF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0257 214 SUPERFAMILY Homeodomain-like 17 112 IPR009057 -
Dere13g0257 214 MobiDBLite consensus disorder prediction 1 20 - -
Dere13g0257 214 MobiDBLite consensus disorder prediction 1 17 - -
Dere13g0257 214 CDD SANT 20 65 IPR001005 -
Dere13g0257 214 SMART sant 17 67 IPR001005 -
Dere13g0257 214 SMART sant 70 118 IPR001005 -
Dere13g0257 214 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 10 140 - -
Dere13g0257 214 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Dere13g0257 214 FunFam MYB-related transcription factor 17 70 - -
Dere13g0257 214 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Dere13g0257 214 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Dere13g0257 214 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Dere13g0257 214 Gene3D - 18 70 - -
Dere13g0257 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Dere13g0257 214 CDD SANT 75 116 IPR001005 -
Dere13g0257 214 Gene3D - 74 143 - -
Dere13g0257 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0257 Dere-ChrDere13 3704835 3705906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0257 3 127 MYB Transcription Factor Family AT3G13540 60.000 4.58e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g0257 Myb_DNA-binding 3.2e-17 CL0123