Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0247 ATGCAACCCTACACATTCCATTCTTATGACTTTGAGTTGAATTTCAATGTCGTTCTCTGTAAAACCCTAACAAGTTTTGTTCCAATAGAAGGCAACGCCATGGACGAACTCAACGAAGGACCACCAAATAGAGAACTCTACGCACTCTTAAACTTGTCGTCGGAAGCCTCAGATGAAGAAATCCGAAGAGCTTATCGTCAATGGGCACAAACCTACCACCCTGATAAATACCAAGCTCCCTATATGAAAGATATTGCTACCGAAAACTTTCAACGCATTTGTTATGCATATGAAGTTTTGTCAGATCCAAATAAAAGGCAAATATATGACATATATGGCATGGAGGGTTTGACCTCTGGTTTGGAACTTGGTTCGAGGCTGGATAGAGCAGAAGAGATAAAGGCTGAATTGGAGAGACTACGGCGAATGAAGGAGCAAGAGAAGATATTAGCACATTTAAGAACTTCTGGTACAATTCTGGCAAATATGTCTTTGCCACACTTTCGAAATGGTGATGGCATCATGAGAGGAATGGCTATGACCAGTGAAGTTCAGTCTCAGTTATCAAAACGTAATACTGTTGCAATTGGTGGAAATTTAGCAGTTTACGGAAATGCAGGTGGTGGGGCTGCTACTGCCTTGTTTAGGCATGAAATTTCAGAAGTTTCTTCTGTAGAGTTTATGGCTTCAACTGGTTTGCGTGCACTGATTGGGGTGCAAACATCTCGTCATTTATCAGTACACTCAGCTGCAACAATGGGCCTTGCTATGTCTTTGCAAGATGGTTCATTAAATCTTTCTAATTCATGGACCCGTCAAGTGTCAGAAACAACACGTGGACATATACAGCTTGCTTTGGGACCACAATCATCTATAGCTGTAGGCTGGCAGAAGAAAGATGATAGAAGATCTGCATCTGGAGAAGTGAAGTTTGGCACAAGCTCTTTTGACATAACAGCTCATTATACTCATCACTTGTCTTCCAAATCTCATGGCCGCATTGCAGGCAGATTTGGGAGTACCGCCCTTGAGATTGAGATTGGTGGTGGGAGGAAGTTATCCAAATTCAGCACTGTCCGCTGGTTGTATGCAATAGGGATTCAGGGTATTTTTTGGAAATTTGAACTGCATCGAGGTGGCCAAAAGTTAATTATTCCTATTTTGCTGAGCAGGCATTTGAACCCTGTCTTTGCCAGTGGAGCATTGGTTATTCCGGCATCTCTTTACTTTCTTCTGAAGAAATTTTTAATCAAACCGTATTACCTAAGAAGGAAAAAGCAGAAGGCTCTAGAGAAAGCAGAGAAAACTTCTCCTCTGGTTCAAGAAGCGAAGGCCGCTGCAGAGAAAGCTCAGCAATTACAGCAAACTGTTGCTAATAGGAAAAGAAATAAGCAATTAGAAACAGGTGGACTGGTTATTACCAAGGCACTATACGGAAATCATGTTGTTTTGAACGAGATAAATGCATCAAGCCAAACAGGTCGTGAATTAACTTCAGATGTCATAGATGTTACAATACCTCTCAATTTCCTTGTTAGTGATTCTGGCCAACTCAAGCTTCATGAAGGTGTAAAAAAATCAGGCATCATGGGCTTTTGTGATCCATGTCCAGGACAACCTAAAAAGTTGTATGTAGAGTACTCTTACGCTGGCAACCAATACAAGGTCTTGGTTGGTGACTATGAAGATTTACTGATACCCCAGGGCGCTCACAGGATTTAA 1722 0.4158 MQPYTFHSYDFELNFNVVLCKTLTSFVPIEGNAMDELNEGPPNRELYALLNLSSEASDEEIRRAYRQWAQTYHPDKYQAPYMKDIATENFQRICYAYEVLSDPNKRQIYDIYGMEGLTSGLELGSRLDRAEEIKAELERLRRMKEQEKILAHLRTSGTILANMSLPHFRNGDGIMRGMAMTSEVQSQLSKRNTVAIGGNLAVYGNAGGGAATALFRHEISEVSSVEFMASTGLRALIGVQTSRHLSVHSAATMGLAMSLQDGSLNLSNSWTRQVSETTRGHIQLALGPQSSIAVGWQKKDDRRSASGEVKFGTSSFDITAHYTHHLSSKSHGRIAGRFGSTALEIEIGGGRKLSKFSTVRWLYAIGIQGIFWKFELHRGGQKLIIPILLSRHLNPVFASGALVIPASLYFLLKKFLIKPYYLRRKKQKALEKAEKTSPLVQEAKAAAEKAQQLQQTVANRKRNKQLETGGLVITKALYGNHVVLNEINASSQTGRELTSDVIDVTIPLNFLVSDSGQLKLHEGVKKSGIMGFCDPCPGQPKKLYVEYSYAGNQYKVLVGDYEDLLIPQGAHRI 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0247 573 Coils Coil 443 463 - -
Dere13g0247 573 ProSitePatterns Nt-dnaJ domain signature. 90 109 IPR018253 -
Dere13g0247 573 PRINTS DnaJ domain signature 47 65 IPR001623 -
Dere13g0247 573 PRINTS DnaJ domain signature 85 105 IPR001623 -
Dere13g0247 573 PRINTS DnaJ domain signature 105 124 IPR001623 -
Dere13g0247 573 PRINTS DnaJ domain signature 65 80 IPR001623 -
Dere13g0247 573 CDD DnaJ 45 102 IPR001623 -
Dere13g0247 573 Pfam DnaJ domain 46 110 IPR001623 -
Dere13g0247 573 ProSiteProfiles dnaJ domain profile. 45 113 IPR001623 -
Dere13g0247 573 Pfam DnaJ-like protein C11, C-terminal 419 567 IPR024586 -
Dere13g0247 573 SUPERFAMILY Chaperone J-domain 43 121 IPR036869 -
Dere13g0247 573 Gene3D DnaJ domain 33 125 IPR036869 -
Dere13g0247 573 Coils Coil 127 150 - -
Dere13g0247 573 PANTHER CHAPERONE PROTEIN DNAJ 13 34 573 IPR042162 -
Dere13g0247 573 SMART dnaj_3 44 105 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0247 Dere-ChrDere13 3625857 3644424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0247 47 112 C2H2 Transcription Factor Family AT1G74250 45.588 1.35e-08 55.8