Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0239 ATGGAGAGACACAAATGCAAGCTCTGCTCCAGAACGTTCGCTAATGGCAGATCATTGGGTGGCCACATGAAGGCTCATTTGGCCACACTACCCCTTCCTCCCAAGCCTCAACCTCCTCCTGCTTCGCCTTCATTCTCGTGTTCCTTCTCACAACAGGAAGAAGAATCAGAGGAAAAGACTTTGATTTATGGGTTGAGAGAGAATCCCAAGAAAAGTATCAAACTTGCAGATCCTAAGTTCTCTTTCGTTGATACTGGCGCTGTTGTTCAGGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCTTCGATCCAAGCGAACCAGAACCCAGAGATTGGCATCAACGAAGCCTAAACCGAGTCCCACTGAGTCGCCGACCGAACCCGAACCGGTAAGCTCGGTTTCTGATACTAGTACTGAAGAAGATGTTGCTATGTGCCTCATGATGCTCTCGAGAGACAAATGGATGAGAAATGCTGTGAAAGAGGATGGAGAAGAAGAGAAATCAAAGGGGCTGGAAGAGATCAAGGTGAAGGGAGTTCGCGGGAAGCATCAGTGCGAGAACTGTAGAAAAAGGTTTCGATCTTCTCGCGCATTGGGGAGTCACAAAAATATCTGCTTTCGTGATGAAGAAGAAGCGAGGAAAGCAGGTACTGATACCATTTTTGAATGCCCATTTTGCTATAAGGTGTTTGGGTCAGGACAAGCACTTGGTGGCCACAAGAGATCTCACCTCTTACCATCTTCATCGTCAACTGTTAACGATTCTGGTAGATTAAAGGAAAGCTTCATAGATCTCAACTTACCAGCTCCAGCTGAAGAAGATGAACTAAGTGTGGTTTCTGATGCATAA 858 0.4674 MERHKCKLCSRTFANGRSLGGHMKAHLATLPLPPKPQPPPASPSFSCSFSQQEEESEEKTLIYGLRENPKKSIKLADPKFSFVDTGAVVQDRESETESKNPTRLRSKRTRTQRLASTKPKPSPTESPTEPEPVSSVSDTSTEEDVAMCLMMLSRDKWMRNAVKEDGEEEKSKGLEEIKVKGVRGKHQCENCRKRFRSSRALGSHKNICFRDEEEARKAGTDTIFECPFCYKVFGSGQALGGHKRSHLLPSSSSTVNDSGRLKESFIDLNLPAPAEEDELSVVSDA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0239 285 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Dere13g0239 285 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 285 IPR044303 GO:0006355
Dere13g0239 285 Pfam C2H2-type zinc finger 3 28 - -
Dere13g0239 285 Pfam C2H2-type zinc finger 224 246 - -
Dere13g0239 285 Pfam C2H2-type zinc finger 186 211 - -
Dere13g0239 285 SMART c2h2final6 4 26 IPR013087 -
Dere13g0239 285 SMART c2h2final6 186 206 IPR013087 -
Dere13g0239 285 SMART c2h2final6 224 246 IPR013087 -
Dere13g0239 285 MobiDBLite consensus disorder prediction 90 104 - -
Dere13g0239 285 Gene3D Classic Zinc Finger 183 246 - -
Dere13g0239 285 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Dere13g0239 285 MobiDBLite consensus disorder prediction 88 142 - -
Dere13g0239 285 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Dere13g0239 285 MobiDBLite consensus disorder prediction 28 59 - -
Dere13g0239 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Dere13g0239 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 246 IPR013087 -
Dere13g0239 285 SUPERFAMILY beta-beta-alpha zinc fingers 186 246 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0239 Dere-ChrDere13 3495596 3496453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0239 1 282 C2H2 Transcription Factor Family AT3G60580 39.490 2.57e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere13g0239 zf-C2H2_6 0.028 CL0361