Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0230 ATGGTGAAGATAGCTCTTGGTAGCTTCAATGACTCATTCAGCGTTGCTTCCCTCAAGGCTTATGCATCAGAGACCATTGCCACTTTGCTTTTTGTATTCGCCGGCGTGGGATCAGCCATCGCTTACGGTGACCTTACAAAGGACGCAGCCCTAGATCCGGCGGGGCTGGTGGCGGTAGCTGTGGCCCACGCATTTGCGCTGTTCGTAGGGGTGTCCGTGGCGGCCAACATCTCAGGTGGCCATTTGAACCCAGCTGTCACTTTTGGATTGGCCATTGGAGGCAACATCACCATCTTGACTGCTATCTTGTACTGGATTCACCAATTGTTGGGCTCCTACGTGGCATGCCTACTCCTCAAGTTTGTGACAAATGGCAAGGCCATTCCAGTCCACGGACTCGCTGCAGGGGTGGGGCCTTTTGAAGGAGTAGTGTTCGAAATTGTTGCAACCTTCGGACTGGTTTACACTGTGTACGCCACCGCCGCTGACCCCAAGAAGGGCTCCCTGGGCGTCATTGCACCCATTGCAATTGGGTTCATCGTGGGTGCCAACATCCTAGCCGCCGGTCCATTCAGTGGCGGTTCAATGAACCCGGCTCGTTCATTTGGTCCTGCCGCTGTGTCAGGAAACTTTGCCGATTACTGGATCTACTGGGTCGGCCCACTGATTGGCGGAGGCTTGGCTGGATTGATCTACGGCGACGTCTTCATTGGTTCATATGCCCCCGTCCCTGCCTCTGAAGGCTATCCTTGA 753 0.5485 MVKIALGSFNDSFSVASLKAYASETIATLLFVFAGVGSAIAYGDLTKDAALDPAGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAIGGNITILTAILYWIHQLLGSYVACLLLKFVTNGKAIPVHGLAAGVGPFEGVVFEIVATFGLVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAAVSGNFADYWIYWVGPLIGGGLAGLIYGDVFIGSYAPVPASEGYP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0230 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere13g0230 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere13g0230 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere13g0230 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere13g0230 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere13g0230 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere13g0230 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere13g0230 250 PANTHER AQUAPORIN-8 4 238 IPR034294 -
Dere13g0230 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere13g0230 250 NCBIfam MIP family channel protein 24 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere13g0230 250 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
Dere13g0230 250 FunFam Probable aquaporin TIP1-1 2 247 - -
Dere13g0230 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Dere13g0230 250 SUPERFAMILY Aquaporin-like 14 237 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0230 Dere-ChrDere13 3398602 3401842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0230 1 247 Major Intrinsic Protein MIP AT5G47450 79.352 8.35e-137 383