Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0204 ATGGGCCGTGGGCCCCCACCGGAGACATATAAGGTGGTTCCGTTTAGAAGGCTCTACTTGTCATCATCCGTTTACTGTAGAATTATATTTGTATATTTCCGTGAAGACGATAAAGGAATGTATTTGGAGAGGTGTCGCTTTCGTATTGGAGAGTCGCTTTTGGAAGGGTGGGCTCCCTACAATTGCAATGGCTCATTATTTTCACAGATGAAATGCTGCGACGTGCCGTTACGGAGATCTGCGCAAGAATTCTGTTTGGAGTTATTCCATATTCTTGGGACAGCAATATATACCAAGGTTTTGAAACTTATTCAGGCAGCGGACATGAATACATTTTCACATGTTCCTCCAGGTTTTCGGTTCCATCCCACTGATGAAGAACTTGTTGATTACTACCTTAGGAAAAAGGTAGCTTCTAAAAGAATTGATCTTGATGTCATCAAAGATGTCGATCTCTACAAAATTGAGCCCTGGGATCTTCAAGAATTATGCAAAATAGGAAGCGAAGAGCAAAATGAATGGTATTTCTTTAGCCATAAAGATAAGAAGTACCCGACAGGAACTCGCACGAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGATAAGGCAATCTATTCAAGGCATAGCCTTATTGGCATGAGAAAGACCCTCGTGTTTTACAAAGGACGAGCCCCTAATGGACAGAAATCTGACTGGATCATGCATGAGTATCGCCTTGAAACTAATGAAAATGCAACTCCTCAGGAAGAAGGATGGGTTGTATGCAGAGTGTTCAAGAAACGAATGACAACAATGCGAAAAGTGGGAGAATATGAATCACCATGTTGGTACGATGAACAAGCATCCTTCATGCAAGATCTTGAATCCCCAAGGCGTATTTCTCCTCCTTACTATGCATGCAAACAGGAGTTGGAATTGCAATACAATATCAATATCCCACACGATGCTTTCCTCCAACTTCCACACCTTGAAAGCCCTAAAGTTCCTCAATCAGCAAATATTCCTATTTATAACAATATCAATGCAATAAGCGCCATGCACTCGTCCCTTTATGCTAGCATTACCACCAACGATCAAGCAGTAGTGGTGGATGATCAAGTAACCGATTGGAGAGTGTTCGACAAATTTGTTGCTTCTCAACTCAGTCACGACCAACATGCTTCCAAGGAAACATCTTATAATTCCAATGCTGCTGTTGTGGCTGAACAAATCACTATGATAGCGAACCAATCCACGAGGCCAGAATTTGAGCAGGAATATGCATCAACATCCACCACCACCAGCAGCCACATCGACCTGTGGAAGTGA 1320 0.425 MGRGPPPETYKVVPFRRLYLSSSVYCRIIFVYFREDDKGMYLERCRFRIGESLLEGWAPYNCNGSLFSQMKCCDVPLRRSAQEFCLELFHILGTAIYTKVLKLIQAADMNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGSEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSRHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENATPQEEGWVVCRVFKKRMTTMRKVGEYESPCWYDEQASFMQDLESPRRISPPYYACKQELELQYNINIPHDAFLQLPHLESPKVPQSANIPIYNNINAISAMHSSLYASITTNDQAVVVDDQVTDWRVFDKFVASQLSHDQHASKETSYNSNAAVVAEQITMIANQSTRPEFEQEYASTSTTTSSHIDLWK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0204 439 FunFam NAC domain-containing protein 124 268 - -
Dere13g0204 439 Pfam No apical meristem (NAM) protein 116 243 IPR003441 GO:0003677|GO:0006355
Dere13g0204 439 SUPERFAMILY NAC domain 112 264 IPR036093 GO:0003677|GO:0006355
Dere13g0204 439 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 114 386 - -
Dere13g0204 439 ProSiteProfiles NAC domain profile. 115 264 IPR003441 GO:0003677|GO:0006355
Dere13g0204 439 Gene3D NAC domain 124 268 IPR036093 GO:0003677|GO:0006355
Dere13g0204 439 MobiDBLite consensus disorder prediction 417 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0204 Dere-ChrDere13 3087050 3092091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0204 109 439 NAC Transcription Factor Family AT1G12260 59.290 7.06e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere13g0204 NAM 4.2e-38 No_clan