Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0192 ATGGGGAGGCAACCATGCTGTGACAAACTAGAAGTGAAGAAAGGACCATGGACTGCTGAAGAAGACAAGAAGCTCATCAACTTCATTCTCAAGAATGGCCAGTGCTGCTGGCGAGCCGTTCCCAAGCTGGCTGGCCTCAGACGCTGTGGCAAGAGTTGTAGGCTTCGTTGGACTAACTATCTTCGTCCTGACTTGAAGAGAGGCCTCCTCACTGAAGAAGAAGAGCAACTTGTTATCGATCTCCATTCTCGCCTTGGCAACAGGTGGTCCATGATAGCTGCGAAATTACCAGGGAGAACAGACAATGAAATTAAAAATCATTGGAACACCCACATCAAGAAAAAGCTGCTTAAGATGGGTATTGATCCTGTCACTCATGAGCCTCTCAACAAACAAGCTGCCTCCCAGGATAATTCATCCCATGCAGAGCATTCTCAACAATCTGGCAGTGAGCATCCTCAGGTTAAGGTTCTCAACTCAGAGGAGAATTCATCCTCATCGCCAGCGGAAGATTCTTGTGGGGATGAATCTCTCTTGCTAGATAGAATTTGTAGCGACGACCCTCTCATGAACAGTTTGTGGCTGGACGAAACTTCGCTGATGGATGCATTATGGGAAAGTACACCTGAGGGACAGAATACTAATAGTGACTTGGCCCTGTCATTTTGGGAGGACAATAGTGCTTGGTTATTGGACTCTCAGGACTTTGGTATTCGTGATTTTGGTTTCACTTGTTTCGACGAGATTGAGTCAAATGCGCTGCGTACTTTAAAAATCGAGGAGAAGGGGCATTAG 795 0.4654 MGRQPCCDKLEVKKGPWTAEEDKKLINFILKNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEEEEQLVIDLHSRLGNRWSMIAAKLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASQDNSSHAEHSQQSGSEHPQVKVLNSEENSSSSPAEDSCGDESLLLDRICSDDPLMNSLWLDETSLMDALWESTPEGQNTNSDLALSFWEDNSAWLLDSQDFGIRDFGFTCFDEIESNALRTLKIEEKGH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0192 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere13g0192 264 CDD SANT 16 61 IPR001005 -
Dere13g0192 264 FunFam MYB transcription factor 11 67 - -
Dere13g0192 264 FunFam MYB transcription factor 70 147 - -
Dere13g0192 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere13g0192 264 PANTHER F14D16.11-RELATED 1 158 - -
Dere13g0192 264 MobiDBLite consensus disorder prediction 130 172 - -
Dere13g0192 264 Gene3D - 71 156 - -
Dere13g0192 264 CDD SANT 71 112 IPR001005 -
Dere13g0192 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere13g0192 264 MobiDBLite consensus disorder prediction 130 173 - -
Dere13g0192 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere13g0192 264 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Dere13g0192 264 Gene3D - 11 67 - -
Dere13g0192 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere13g0192 264 SMART sant 66 114 IPR001005 -
Dere13g0192 264 SMART sant 13 63 IPR001005 -
Dere13g0192 264 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0192 Dere-ChrDere13 2989138 2990225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0192 1 243 MYB Transcription Factor Family AT4G22680 56.015 5.36e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g0192 Myb_DNA-binding 6e-14 CL0123