Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0164 ATGGATCCAATTTCAGCGCACGCTCATTCTCTTCCTCCTCCTTTCCACACAAGAGATCTCCATCCACACCAATTCCACTCTCTACACCAAAACACAGAAGACGAGCAGAGCGGAAGCAGCGGTGGCCTCAACCTTTCTCAGAAAAGGGACCGCGAAGAGAACAGCAACAACAGCGAAGGCAAGGATGTCGCCGGCGCAGCCGAAGCCGAAATCTCAAGAAGACCCCGAGGAAGACCTGCCGGCTCCAAGAACAAACCCAAGCCACCCATCATCATCACGCGCGACAGCGCCAACGCGCTTAGAACCCACGTCATGGAGGTGGCCGACGGCTGCGACATCGTGGAGAGTGTCTCCAACTTCGCCAGGCGGCGGCAGAGAGGGGTCTGCATAATGAGCGGGACAGGAACGGTAACGAATGTCACGCTCAGGCAGCCAGCTTCTTCAGGAGCCGTTGTCACTCTCCATGGAAGGTTCGAGATATTGTCTCTGGCAGGGTCGTTCTTACCGCCGCCGGCTCCTCCGGCCGCGTCAGGATTGACGATATATTTGGCTGGAGGACAAGGGCAGGTCGTAGGGGGAAGCGTGGTTGGAACACTAATAGCTTCTGGGCCGGTGGTTATCATGGCGGCATCGTTTAGTAACGCTGCGTATGAGAGGCTTCCTTTGGAAGAAGATGATCCTTCCATGCCAATGCAAGGCGGTAGCGGTGGCGGTATCGGGTCTCCGGGTGGTGCCAGTCAACAGCAGCCGGGCCAGCTTTTAGGGGATACAAACGTAACGGCTCCCCTTTTCCATGGTTTGCCTCCGAATCTACTGAATTCTATTCAAATGCCATCGGAAGCATTCTGGGCTACTGGTCGCCCTCCATACTGA 873 0.5613 MDPISAHAHSLPPPFHTRDLHPHQFHSLHQNTEDEQSGSSGGLNLSQKRDREENSNNSEGKDVAGAAEAEISRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEVADGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDPSMPMQGGSGGGIGSPGGASQQQPGQLLGDTNVTAPLFHGLPPNLLNSIQMPSEAFWATGRPPY 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0164 290 CDD DUF296 101 168 IPR005175 -
Dere13g0164 290 ProSiteProfiles PPC domain profile profile. 97 233 IPR005175 -
Dere13g0164 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 285 IPR014476 GO:0003680
Dere13g0164 290 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 226 - -
Dere13g0164 290 FunFam AT-hook motif nuclear-localized protein 100 227 - -
Dere13g0164 290 Gene3D - 100 228 - -
Dere13g0164 290 MobiDBLite consensus disorder prediction 14 30 - -
Dere13g0164 290 MobiDBLite consensus disorder prediction 31 45 - -
Dere13g0164 290 PIRSF ESCAROLA 16 290 IPR014476 GO:0003680
Dere13g0164 290 MobiDBLite consensus disorder prediction 223 256 - -
Dere13g0164 290 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 214 IPR005175 -
Dere13g0164 290 MobiDBLite consensus disorder prediction 241 256 - -
Dere13g0164 290 MobiDBLite consensus disorder prediction 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0164 Dere-ChrDere13 2717628 2718500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0164 1 290 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 56.928 5.75e-91 271