Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0152 ATGAGGGTACCTAACTCTCATCGCTTGGACTTATCATCCTTATCCAAAAGCTTAAACATGGCTTCCATCCTTCACTTTGGTAAGTTGTTGTTGCTTTCATTGATGCTCACAATCCTCGGAAAACTAACGGCAGCTGTCGGAGTTTTCCGACCCAGTCCATGGGCTCTTGCCCACGCCACATTCTACGGCGACGAGACTGCCTCTGCAACCATGGGAGGAGCGTGTGGCTACGGGAACTTGTTTATGAATGGATATGGCACAGACACGGTGGCATTGAGCTCCACCTTGTTCAACAATGGATACGCCTGCGGGACATGTTACCAAATCAAATGCTACCAATCAAGCGCATGTCACAGAGACGTGCTGTTCACCACAGTGACAGCCACCAATCTCTGCCCTCCGAACTGGGCTCAACCCTCTGACAACGGCGGGTGGTGCAACCCGCCACGTGTGCATTTCGACATGTCGAAGCCAGCATTCATGAAGATAGCAGATTGGAAGGCTGGGATTGTGCCTGTTCTATACAGGAGAGTGCCGTGCTGGAAGAAGGGAGGGCTGCGATTCTCTTTCCAGGGAAACGGGTATTGGCTGCTGGTGTACGTGATGAACGTAGGAGGAGGAGGAGATATAGGGAGCATGTGGGTGAAAGGAAGCAGAACGGGATGGATCAGGATGAGCCATAACTGCGGAGCATCGTATCAGGCATTTGCAACGTTAGGTGGACAAGCTTTGTCTTTCAGAATAACATCCTACACAACCAGACAGACTGTTATTGCCTGGAACGTTGCTCCTCCCAATTGGAGCGTGGGACTCACTTATTCCACCTTCGTCAACTTCCGCTAA 843 0.5101 MRVPNSHRLDLSSLSKSLNMASILHFGKLLLLSLMLTILGKLTAAVGVFRPSPWALAHATFYGDETASATMGGACGYGNLFMNGYGTDTVALSSTLFNNGYACGTCYQIKCYQSSACHRDVLFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMSKPAFMKIADWKAGIVPVLYRRVPCWKKGGLRFSFQGNGYWLLVYVMNVGGGGDIGSMWVKGSRTGWIRMSHNCGASYQAFATLGGQALSFRITSYTTRQTVIAWNVAPPNWSVGLTYSTFVNFR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0152 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 185 IPR007112 -
Dere13g0152 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 275 IPR007117 -
Dere13g0152 280 SUPERFAMILY PHL pollen allergen 182 274 IPR036749 -
Dere13g0152 280 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Dere13g0152 280 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Dere13g0152 280 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Dere13g0152 280 PRINTS Expansin/Lol pI family signature 168 184 IPR007118 GO:0005576
Dere13g0152 280 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Dere13g0152 280 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Dere13g0152 280 SUPERFAMILY Barwin-like endoglucanases 53 203 IPR036908 -
Dere13g0152 280 PANTHER EXPANSIN-A15 35 274 IPR002963 GO:0009664
Dere13g0152 280 SMART dpbb_1 89 175 IPR007112 -
Dere13g0152 280 PRINTS Expansin signature 124 134 IPR002963 GO:0009664
Dere13g0152 280 PRINTS Expansin signature 184 196 IPR002963 GO:0009664
Dere13g0152 280 PRINTS Expansin signature 160 173 IPR002963 GO:0009664
Dere13g0152 280 PRINTS Expansin signature 231 252 IPR002963 GO:0009664
Dere13g0152 280 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Dere13g0152 280 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Dere13g0152 280 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Dere13g0152 280 Pfam Expansin C-terminal domain 187 264 IPR007117 -
Dere13g0152 280 Gene3D - 186 280 IPR036749 -
Dere13g0152 280 CDD DPBB_EXPA_N 53 180 - -
Dere13g0152 280 Gene3D - 43 180 IPR036908 -
Dere13g0152 280 Pfam Lytic transglycolase 89 175 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0152 Dere-ChrDere13 2627388 2629569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0152 20 280 Expansin Gene Family AT1G12560 64.504 8.78e-123 349