Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0150 ATGGTGAGGGGAAAAACTCAGATGAAGCGAATCGAAAATGACACAAGCAGGCAAGTAACGTTCTCAAAAAGAAGAAACGGGCTGCTGAAGAAGGCCTTCGAGCTCTCAGTGCTGTGTGATGCTGAAGTTGCACTCATAATTTTCTCTTCCAGAGGCAAGCTCTATGAATTTTCCAGTTCTAGTATAAACAAAACAGTTGAACGTTATCAGAGGAAACACAAGGACCTGGGTCACTGCCCCAAAGGAAACCAAGAAAACACACAGCATGTGAAAGAAGGGACCATCGACGTCGAAAAGAAGCTTGAGCATATTGAAATCTCTAGAAGGAAGCTTTTGGGAGATTGTTTGGATACATGTTCTATTGAGGACCTAACCCAAATAGAGAACCAGCTGGAACGAAGCTTAACCAAAATTAGGGCAAGAAAGACTCAGCTGTTCAGGGAGCAGATTGAGAAACTAAAGGAAGAGGAAAAGTGCCTTCTGGAAAGAAATAGAGAGTTACGGGAGCAGTATGGGATTGAAGTGCAAGCTTCAACAAGAAAAGATGATATGGGAGGGGTGGTGGACGAGGTGGAGACAGATTTGTTCATAGGGCCACCTGAGAGACGAAGCAACCGCAAGAAAGTCACGTTCTGCACGCAACCGCTCACTCCGACTCCGACCTCTACCAATTTCCCTGGAAGTTTGTTCCAAACTTTCAATGCTCAAACTGAGAAGCAAAAGCTAAAGCTAAAAGCCGATTCTAAAGCAGAATCAAAAGCCAACACAGGGCATCCATTAAGTCTCATACTCCTCAAAGTTGTCTTTAGTTGCAAACTTGAACGAACCCACGAAGATTGGGGATTCAGGAAGCTTGTCTTGTTATTTCATCTCTTGTCGGAGATGGGTACTGTGACGGCTTCTCCCATCCTCCCTTCCACGCTTAAGCCTTCATTCTCCGAGCGACATCTTTCTGTTTTTCCTCACAGAAGGCGACCCTGCAAGAAGAAACAACCACTTGTTCCTGTTGCTAGGTTGTTCGGGCCTGCGATCTTTGAAGCTTCAAAACTCAAAGTTTTATTCTTAGGTGTGGATGAAAATAAACACCCAGGCAAGCTTCCAAGGACTTATACTCTAACCCATAGCGATATCACTTCTAAACTCACTCTCGCAATCTCTCAGAGTATAAACAATTCTCAGTTGCAAGGGTGGTACAATAGATTACAAAGGGATGAAGTGGTGGCAGAGTGGAGGAAGGTGAAGGGAAAAATGTCTCTCCACGTTCACTGCCATATCAGTGGAGGTCATTTCCTTCTGGATATATGTGCTAGACTAAGATACTTCATCTTCCGTAAGGAACTTCCTGTGGTATTGAAGGCATTTGTTCACGGGGATGGAGATTTGTTCAACTACTACCCAGAATTGCAGGATGCTATGGTTTGGGTTTACTTTCACTCCAACATTCAAGAATTCAACAAAGTTGAATGTTGGGGTCCACTGAAGGACCCATCGGCACCAAAATCATCAAGTGGGTCCCAGGAAGAGTATGGGATAGGGTTGGAAACTTCTTCAAGTAACTCGGACCTGCCACAGCCATGCCCACAAGACTGTGAGTGTTGCTTTCCACCCATGAATTTGAGCTCAATCCCGTGGTCTCAGGAACTTCCCCTTCACAATAATCAACTATTTAATGGGACCCAGCAGCACAACTTACAGGCATCAGAGTAA 1707 0.447 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLYEFSSSSINKTVERYQRKHKDLGHCPKGNQENTQHVKEGTIDVEKKLEHIEISRRKLLGDCLDTCSIEDLTQIENQLERSLTKIRARKTQLFREQIEKLKEEEKCLLERNRELREQYGIEVQASTRKDDMGGVVDEVETDLFIGPPERRSNRKKVTFCTQPLTPTPTSTNFPGSLFQTFNAQTEKQKLKLKADSKAESKANTGHPLSLILLKVVFSCKLERTHEDWGFRKLVLLFHLLSEMGTVTASPILPSTLKPSFSERHLSVFPHRRRPCKKKQPLVPVARLFGPAIFEASKLKVLFLGVDENKHPGKLPRTYTLTHSDITSKLTLAISQSINNSQLQGWYNRLQRDEVVAEWRKVKGKMSLHVHCHISGGHFLLDICARLRYFIFRKELPVVLKAFVHGDGDLFNYYPELQDAMVWVYFHSNIQEFNKVECWGPLKDPSAPKSSSGSQEEYGIGLETSSSNSDLPQPCPQDCECCFPPMNLSSIPWSQELPLHNNQLFNGTQQHNLQASE 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0150 568 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Dere13g0150 568 Coils Coil 121 141 - -
Dere13g0150 568 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Dere13g0150 568 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere13g0150 568 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Dere13g0150 568 MobiDBLite consensus disorder prediction 497 522 - -
Dere13g0150 568 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Dere13g0150 568 Coils Coil 143 170 - -
Dere13g0150 568 Pfam Staygreen protein 345 495 IPR024438 -
Dere13g0150 568 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere13g0150 568 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere13g0150 568 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere13g0150 568 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere13g0150 568 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere13g0150 568 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere13g0150 568 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere13g0150 568 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere13g0150 568 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 307 561 - -
Dere13g0150 568 MobiDBLite consensus disorder prediction 498 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0150 Dere-ChrDere13 2608493 2619519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0150 1 207 MADS-box Gene Family AT4G22950 60.930 6.74e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere13g0150 Staygreen 1.5e-57 No_clan