Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0148 ATGCAAGAAGCAGGATTGGGAATGATGGGCGGGGGTTTAAGCGGAGAAGTCTCGCCGTCCGGCGAACTCCTCCGGCAACTGAAGGCCGAGATAGCGACGCACCCTCTCTGTGAGCAGCTTCTGGCGGCGCATGTTGGTTGCCTCCGCGTCGCCACTCCGATCGATCAGCTTCCACTCATCGACGCTCAGTTAGCGCAGTCTCATCATCTTCTCCGCTCTTACGCCTCGCTTCACTCCCATTCCCTTTCGCCTCATGATCGCCAAGAGCTTGACAACTTCCTGGCACAATATTTGGTAGTGTTGTGTAGTTTCAAAGAACAGCTTCAGCAACATGTCAAAGTTCATGCCGTGGAGGCTGTTATGGCCTGCCGTGATATTGAAAATACCTTACAAGCTCTCACAGGAGTAAGCTTGGGAGAAGGAAGTGGGGCAACAATGTCAGATGATGAAGATGATTTGGCGATGGATTTCTCAATTGATCAGTCAGGCGTTGAAGGGCATGACATGATGGGCTTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAGCTAAAGATTGAGCTGAAGCAGGGTTTCAAGTCAAGAATTGAAGATGTCCGAGAGGAAATTCTAAGGAAAAGAAGAGCTGGGAAATTACCAGGTGACACAACTTCAGTGTTAAAGAACTGGTGGCAGCAACATGCTAAGTGGCCCTATCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGAAAACGAAACTGGCACAGCAGCTCTCAATCTGTCACCTCTTTGAAGTCCAAGCGCAAGAGGTAG 867 0.4902 MQEAGLGMMGGGLSGEVSPSGELLRQLKAEIATHPLCEQLLAAHVGCLRVATPIDQLPLIDAQLAQSHHLLRSYASLHSHSLSPHDRQELDNFLAQYLVVLCSFKEQLQQHVKVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDLAMDFSIDQSGVEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSSSQSVTSLKSKRKR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0148 288 Pfam KNOX2 domain 83 134 IPR005541 GO:0003677|GO:0005634
Dere13g0148 288 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
Dere13g0148 288 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 274 - -
Dere13g0148 288 SMART HOX_1 213 278 IPR001356 GO:0003677
Dere13g0148 288 CDD homeodomain 214 275 IPR001356 GO:0003677
Dere13g0148 288 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Dere13g0148 288 FunFam homeobox protein knotted-1-like 3 isoform X1 212 273 - -
Dere13g0148 288 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Dere13g0148 288 Gene3D - 210 284 - -
Dere13g0148 288 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Dere13g0148 288 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Dere13g0148 288 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Dere13g0148 288 SUPERFAMILY Homeodomain-like 213 277 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0148 Dere-ChrDere13 2572025 2577549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0148 1 287 Homeobox Transcription Factor Family AT1G62990 80.822 3.08e-174 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere13g0148 KNOX2 3.1e-18 No_clan