Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0146 ATGGCTCGTTTTGATTTGGGTGAAACGCTATCCTTTGGTGGCTCAAACCATGGACTGGGCCACCTAGTCGTTCCTTTTTCAACCACTACGAGTTCCTTAAGGTACTTGCTTCTACATGGAAACTTAGATATATGTGTAAAAGAGGCCAAAAACTTGCCGAACTTAGACGTGTTCCATCAGAAAATAGGGGATATGTTTTCCAGATTACCTGGAAAACTTGGCCAAAAAATTGAAGGGCATATGTCCAATACAATCATTGGTAGTGATCCATATGTGACTGTATCTGTGGCGGGTGCTGTAATTGCGAGGACATTTGTAATCGAGAACGAGGAGAACCCTATTTGGATGCAGCATTTCAATGTTCCCGTCGCACATTATGCTGCAGAAGTACACTTTGTGGTAAAGGACAGCGATGTTGTGGGTTCACAGATCATAGGTGCCGTGGGAATTCCAGTGGAACAGTTATATAAAGGCACAAAAGTTGAGGGATCTTTTCCAATCCTTAATTCTGGTGGGAAACCTTGCAAAGTTGGAGCAGTCTTGAGTTTATCCATTCAATACATTCCTTTTGATAAGGTGGCTCTCTATGCTCATGGAGTAGGGGCAGGTCCTAATTATGAGGGGGTGCCCGGTACATACTTTCCCCTTCGGAAGGGTGGTCAAGTTAGACTTTATCAAGACGCTCATGTTCATGGAGGTTGTCTTCTTCCCAATTTGAAGATGGAAGGTGATGTGAGTTATGAGCATGGGAATTGTTGGCGAGAAATCTTTGATGCAATAAGTCAGGCCCGTCGATTGATTTACATCGTGGGATGGTCTGTGTACTACAATGTTAGACTAGTTCGGGATACTGATGATGCAAAAGCTTGCACATTGGGCGATCTTCTCAAAATCAAATCACAGGAAGGTGTGAGAGTGCTGCTACTTGTGTGGGACGATCCCACTTCTAGAAGCATGCTTGGATATAAAACGGATGGACTTATGAGCACACATGATGAGGAAACTCGCCAATTTTTTAAGAACTCTTCAGTACGAGTTCTACTTTGCCCCCGATCAGGTGGAAAAGGACATAGTTGGGTCAAACAGCAGGAAGCCGGAACCATCTATACTCATCATCAGAAAACAGTCATTGTGGATGCTGATGCAGGCCAGCATAAAAGAAAGATTATAGCATTCATTGGAGGTCTTGATTTATGTGATGGCAGATACGATACACCACAGCATTATTTGTTCAGGACTTTGCAGACAACACACAAGGATGATTATCATAACCCTAACTTTGTGGGGCCTGTTGATGGTTGTCCAAGACAACCGTGGCATGATTTGCACGCACAAATTGATGGTCCAGCTGCATATGACATCCTCACCAATTTTGAGGAGCGTTGGTTAAAGGCGTTAAAAATGCAAGGACTTCAAAAGATGAAGAGTTCACATGACGATTCATTACTGAGAATTGATAGAATCTCTGATATCCTTGGCATTGCTGATATTCCCAGCCTGAATGACGATAACCCAGCAGCTTGGCATGTCCAGGTCTTCCGTTCAATTGATTCAAATTCTGTCAAAGGATTTCCCAAGGACCCTAAAGATGCTATAAATAGGAACTTGGTTTGTGGAAAGAATGTAATGATAGACATGAGCATACATTCTGCATATGTGAAGGCAATCCGAGCTGCCCAAAAGTTCATCTATATTGAGAACCAATACTTTCTTGGCTCGTCATATAATTGGGATTCTCACAAAGACATAGGTGCAAACAACTTGATTCCGATGGAAATCGCTCTCAAAATAGCCACCAAAATCAAACAACGTGAGAGGTTCGCAGCCTATATTGTCATTCCTATGTGGCCTGAAGGTGTACCCACGAGTGCAGCTACTCAGCGGATTCTATTCTGGCAGTTTAAAACAATGCAAATGATGTACGAAACGGTTTACAAGGCCTTACAGGAGGCTGGACTTGACAATGAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTTGGCAATCGTGAGGCCCCAGAAAACCAAAATATTTTAAATGCTATAAATCCTGCTGGAGCTAACACTCCTCAACCTCAGGCACTCACCCAAAAGAACCGGCGGTTCATGATTTATGTTCATTCAAAAGGAATGATAGTGGATGATGAATATGTGATACTGGGATCTGCGAACATCAACCAACGTTCCATGGAAGGCACACGAGACACAGAGATAGCAATGGGTGCGTATCAGCCTCGTCATACTTGGGCAAGCAAGCACTCTAGGCCTCGTGGACAGGTGTATGGATATAGAATGTCATTGTGGGGAGAACATATAGGGAGCTCAGAAGAATGTTTCGAGAAACCAGAGAGTCTTGAATGTGTGAGACGGATAAGGTACTTGAGTGAGCTAAACCGGAGACAGTACTTGGCGGATGAGGTAACCGAAATGAAAGGGCATTTATTAAAATATCCACTTGAAGTTGATTCAATGGGGAAGGTGAAGCCTCTTCCTGGCTGTGAGACATTTCCGGATGTTGGTGGCAACATTAAGGGCACATTTGCACTCATACAAGAAAATCTCACCATCTGA 2574 0.4336 MARFDLGETLSFGGSNHGLGHLVVPFSTTTSSLRYLLLHGNLDICVKEAKNLPNLDVFHQKIGDMFSRLPGKLGQKIEGHMSNTIIGSDPYVTVSVAGAVIARTFVIENEENPIWMQHFNVPVAHYAAEVHFVVKDSDVVGSQIIGAVGIPVEQLYKGTKVEGSFPILNSGGKPCKVGAVLSLSIQYIPFDKVALYAHGVGAGPNYEGVPGTYFPLRKGGQVRLYQDAHVHGGCLLPNLKMEGDVSYEHGNCWREIFDAISQARRLIYIVGWSVYYNVRLVRDTDDAKACTLGDLLKIKSQEGVRVLLLVWDDPTSRSMLGYKTDGLMSTHDEETRQFFKNSSVRVLLCPRSGGKGHSWVKQQEAGTIYTHHQKTVIVDADAGQHKRKIIAFIGGLDLCDGRYDTPQHYLFRTLQTTHKDDYHNPNFVGPVDGCPRQPWHDLHAQIDGPAAYDILTNFEERWLKALKMQGLQKMKSSHDDSLLRIDRISDILGIADIPSLNDDNPAAWHVQVFRSIDSNSVKGFPKDPKDAINRNLVCGKNVMIDMSIHSAYVKAIRAAQKFIYIENQYFLGSSYNWDSHKDIGANNLIPMEIALKIATKIKQRERFAAYIVIPMWPEGVPTSAATQRILFWQFKTMQMMYETVYKALQEAGLDNEYEPQDYLNFFCLGNREAPENQNILNAINPAGANTPQPQALTQKNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPRHTWASKHSRPRGQVYGYRMSLWGEHIGSSEECFEKPESLECVRRIRYLSELNRRQYLADEVTEMKGHLLKYPLEVDSMGKVKPLPGCETFPDVGGNIKGTFALIQENLTI 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0146 857 FunFam Phospholipase D delta 243 481 - -
Dere13g0146 857 CDD C2_plant_PLD 36 188 - -
Dere13g0146 857 Pfam Phospholipase D Active site motif 368 402 IPR001736 GO:0003824
Dere13g0146 857 Pfam Phospholipase D Active site motif 704 730 IPR001736 GO:0003824
Dere13g0146 857 PIRSF PLD_plant 27 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Dere13g0146 857 Pfam Phospholipase D C terminal 777 847 IPR024632 -
Dere13g0146 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 367 402 IPR001736 GO:0003824
Dere13g0146 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 32 190 IPR035892 -
Dere13g0146 857 Gene3D Endonuclease Chain A 239 485 - -
Dere13g0146 857 SUPERFAMILY Phospholipase D/nuclease 212 466 - -
Dere13g0146 857 PANTHER PHOSPHOLIPASE D 32 846 IPR015679 -
Dere13g0146 857 ProSiteProfiles C2 domain profile. 25 165 IPR000008 -
Dere13g0146 857 Pfam C2 domain 40 167 IPR000008 -
Dere13g0146 857 SUPERFAMILY Phospholipase D/nuclease 548 788 - -
Dere13g0146 857 Gene3D Endonuclease Chain A 507 753 - -
Dere13g0146 857 Gene3D C2 domain 23 188 IPR035892 -
Dere13g0146 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 703 730 IPR001736 GO:0003824
Dere13g0146 857 FunFam Phospholipase D 515 749 - -
Dere13g0146 857 SMART pld_4 703 730 IPR001736 GO:0003824
Dere13g0146 857 SMART pld_4 367 402 IPR001736 GO:0003824
Dere13g0146 857 SMART C2_3c 41 164 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0146 Dere-ChrDere13 2564285 2569040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0146 32 857 Phospholipase D Gene Family (Wang group) AT2G42010 71.529 0.0 1301