Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0135 ATGGACATTTTCAGAGAACAACCAACGTCTTCGTCGTCGGAAGCAAGCTCGTGGTCCGATGAAGTCATACTGTTAGCGTCGGAGCGACCCAAGAAGCGAGCGGGTCGGAGGATTTTCAAGGAGACGAGGCATCCGGTGTACAGAGGAGTGAGACGGAGGAACAACAACAAGTGGGTCTGCGAGGTTCGTGTGCCCAATGATAAGTCCAGGATTTGGCTTGGGACTTATTCGACGGCTGAGATGGCTGCACGGGCGCATGACGTGGCAGCACTGGCCCTTCGCGGGAAGTCGGCTTGCCTGAATTTTGCTGACTCGGCTTGGCGGCTACCTCTGCCGGAATCAACCAATGCGGCGGAGATTAGGAGGGTAGCGGCTCTAGCGGCTCAGGAATTTGGGAAGGGAAGCGATGATTATGAAGTTTGCAGTCGCAGTAGTGTGATTGGAGCCATCGGAGAAGCGGAGAATATGCAAGATTATTGTAAAGGGATGTGCATGGATCAAGTTCCAGCGGTGTTGGAGCTTGATGAGCTCCGTCGTCATTTGCTACTGAGTATGGCGGATGAGCCTCTTCGATCGCCGCCTCCTATTTTGCCAGATGGTTGGAGCTGGAATGACGGGGACGCTGATACTGAGGTCTCATTGTGGCAGTTTTGA 654 0.5382 MDIFREQPTSSSSEASSWSDEVILLASERPKKRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSRIWLGTYSTAEMAARAHDVAALALRGKSACLNFADSAWRLPLPESTNAAEIRRVAALAAQEFGKGSDDYEVCSRSSVIGAIGEAENMQDYCKGMCMDQVPAVLELDELRRHLLLSMADEPLRSPPPILPDGWSWNDGDADTEVSLWQF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0135 217 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Dere13g0135 217 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Dere13g0135 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 216 IPR045277 GO:0003700
Dere13g0135 217 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Dere13g0135 217 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Dere13g0135 217 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Dere13g0135 217 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Dere13g0135 217 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Dere13g0135 217 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Dere13g0135 217 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0135 Dere-ChrDere13 2488407 2489060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0135 13 217 AP2-EREBP Transcription Factor Family AT4G25470 50.237 3.29e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere13g0135 AP2 6.7e-14 CL0081