Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0134 ATGGCCTCGTCCACATGTTCCAAGAGGCACCCCCTGTACCGTGGAATCCGGTGCCGCGGTGGTAAATGGGTATCGGAGATCCGGGAGCCACGTAAGACGTCACGCATATGGCTTGGAACATTCGCCACGCCGGAGATGGCCGCCGCCGCCTTTGACGTGGCGGCGTTGGCCCTGAAAGGCAAGGATGCTGTTCTCAACTTGCCTGACTTGGTCGGACGGTATCCGGTACCGCTGTCCACCTCTCCTACTCACATTCGTAGTGCTGCCACTGCTGCTGCTTCACTATTCAGCGCTGAATCTAACTCCAATTTCTCCCACAATGCATCGTCTTCTTCTGTTAAGGTAGTTGATAATAGTAATAATGCGAATGCCTTCTCGTTCTCATCGTGCTTCTCTGAAACTGATCAATTTGTGGACGAGGATGCCATTTTCGGCATGCCTAGTTTGCTTGTGGACATGGCTGAGGGAATGCTCTTGTCCCCTCCCAGAATCACCCCTCCACCCTCAGACAACTCCACTGCAGAATTTTTGTGGAGCTACTACTGA 546 0.5311 MASSTCSKRHPLYRGIRCRGGKWVSEIREPRKTSRIWLGTFATPEMAAAAFDVAALALKGKDAVLNLPDLVGRYPVPLSTSPTHIRSAATAAASLFSAESNSNFSHNASSSSVKVVDNSNNANAFSFSSCFSETDQFVDEDAIFGMPSLLVDMAEGMLLSPPRITPPPSDNSTAEFLWSYY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0134 181 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Dere13g0134 181 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
Dere13g0134 181 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Dere13g0134 181 PIRSF PTI6 2 159 IPR017392 GO:0003700
Dere13g0134 181 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Dere13g0134 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 155 - -
Dere13g0134 181 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Dere13g0134 181 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0134 Dere-ChrDere13 2477153 2477698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0134 7 180 AP2-EREBP Transcription Factor Family AT5G52020 48.352 4.62e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere13g0134 AP2 1.1e-08 CL0081