Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0125 ATGTCGACGTCCAGGTTACTGAACCGTTCCGCTGAGGACATTGTCGATTCAACGCCGTTTCTGGGGAATTCAGGTGGCTCGTCCGATGAATTCAATTCTGGCCGTCGATTTGTGCAGAGGCAGAGCCTGCGCCAAGCCGCACGGTTTCTCAGTCAGGCCAGTAGCCGTAGGATGATGCGCGAGCCCTCGATGATGGTCAGGGAGACTGCAGCCGAGCAATTGGAAGAGAGACAGAGCGATTGGGCTTATTCCAAGCCCGTTGTGATTCTTGATATTATTTGGAACTTTGCTTTTGTCATTGTGGCTGCTACAGTATTGGTTTTGAGCCGAAATGAATCACCGATCGTGCCTTTGAGGTTGTGGATTGTGGGTTATGCTCTGCAATGCGTCCTTCACATGTACTGTGTTTGCGTTGAGTATAGGAGGCGAAGGAGGTACCAAAGCAGCCAATCTTCGCCATCTCCGATCATAGTGCAAGAAAGATTTGGCAGCAGTGACAACTTGAGTTCCGGTTCAAGGGAGGGTTCTGGGCATTATGAGTCCTTGCCGCCATTGCAGGAGGAGGGTACAAGTAGTGTTGCAAAGCATCTGGAATCGGCCAATACATTGTTTTCATTCATTTGGTGGATCGTTGGATTTTACTGGGTGTCTACTGGTAGTCACGCTTTACCTCATGTTTCTCCTCAGCTTTACTGGCTATGCGTAATTTTCCTGGCTTTTGACGTTTTCTTTGTCATTTTCTGCGTTGCACTGGCATGCATGATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCCCTTCTTTATGCAGTTGCAGACCAGGAAGGGGCATCAAAACATGACATTGAGCAGTTGTCAAAATTCAAATTCCGAAGAATAGACAATGAGAAAGCTGCTGGTAGTACACAGGGACCTGTTGGAGGAATGATGACTGAACATGGCTCTGATTCGCTGACTGAACGCTTTCTTTCTGAGGAGAATGCGGAATGTTGCATCTGCATTTCTGCTTATGACGATGGGGTTGAGCTCAGAGAACTTCCTTGCGGCCACCATTTTCACTGTGCCTGTGTGGATAAGTGGCTGTATATCAACGCTACTTGTCCCCTCTGCAAGTATAACATTTTGAAGAGTAGCAGCCATGGACCAGAGGAAGTTTAG 1164 0.4768 MSTSRLLNRSAEDIVDSTPFLGNSGGSSDEFNSGRRFVQRQSLRQAARFLSQASSRRMMREPSMMVRETAAEQLEERQSDWAYSKPVVILDIIWNFAFVIVAATVLVLSRNESPIVPLRLWIVGYALQCVLHMYCVCVEYRRRRRYQSSQSSPSPIIVQERFGSSDNLSSGSREGSGHYESLPPLQEEGTSSVAKHLESANTLFSFIWWIVGFYWVSTGSHALPHVSPQLYWLCVIFLAFDVFFVIFCVALACMIGIAVCCCLPCIIALLYAVADQEGASKHDIEQLSKFKFRRIDNEKAAGSTQGPVGGMMTEHGSDSLTERFLSEENAECCICISAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSHGPEEV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0125 387 Pfam Ring finger domain 331 373 IPR001841 -
Dere13g0125 387 SUPERFAMILY RING/U-box 321 379 - -
Dere13g0125 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Dere13g0125 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Dere13g0125 387 PANTHER TARGET OF ERK KINASE MPK-1 54 378 - -
Dere13g0125 387 CDD RING-H2_RNF6-like 331 373 - -
Dere13g0125 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 381 IPR013083 -
Dere13g0125 387 MobiDBLite consensus disorder prediction 164 186 - -
Dere13g0125 387 SMART ring_2 332 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0125 Dere-ChrDere13 2355604 2361173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0125 24 382 C3H Transcription Factor Family AT1G68070 47.802 1.71e-112 330