Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0123 ATGAGCTCCAGATCTGGAAGCCAAGGACAAACTGTTAAACTCGAGAGTGGAGAATTGGACTCGCAGTCGCAGAGATCTATTCCGACGCCGTTTTTGACGAAAACCTACCAACTCGTGGACGATCGTTCTATAGATGACCTAATTTCCTGGAATGATGATGGAACGAGTTTCATAGTCTGGAAACCAGCAGAATTCGCTCGAGATTTGCTGCCTAAGTATTTCAAGCACAACAACTTTTCCAGTTTCGTCCGCCAACTTAACACCTATGGATTTCGGAAGGTCGTACCAGATCGTTGGGAATTTGCTAATGACAGCTTTCGGCGAGGGGAAAGAGGCCTTCTTCGTGACATACAACGGCGGAAGATTACATCACTGTCGACGGCGACGGCTAGTGCGACGGTTGCGTTGGGAAGAGTGATGTCTCCATCCAACTCCGGCGACGAGCAGGTAATATCCTCAAACTCACCTCCAATGGTCGGAAATAATACAGTGCACCGCACCACAAGTTGCACCACTACGCCAGGGCTCTTAGAAGAGAACGAAAGGCTTAGAAAAGAGAACATGCAATTGAGTCACGAATTAAGTCAACTGAAGGGTCTGTGTAATAACATACTCGCTTTGATGTCCAATTATGCTTCTGGCCAACTAGAGAGCTCTTGTAGTTCTGTGTCTGAAGGAAAACCGTTGGAGCTCTTACCTGTGAAGCAAGTTCTGTGTGAAGAAGCTGAGGTGCCAAAGTTGTTTGGGGTTTCCATTGGGGTGAAACGATGTCGGAGAAATGGAGAGGAAGCTGGCATAGAAGAAGCAAATCAAACACTGTCCAGCTCGCAGGAACCTGATGGGGTGGGTCTGATATGA 858 0.4755 MSSRSGSQGQTVKLESGELDSQSQRSIPTPFLTKTYQLVDDRSIDDLISWNDDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDSFRRGERGLLRDIQRRKITSLSTATASATVALGRVMSPSNSGDEQVISSNSPPMVGNNTVHRTTSCTTTPGLLEENERLRKENMQLSHELSQLKGLCNNILALMSNYASGQLESSCSSVSEGKPLELLPVKQVLCEEAEVPKLFGVSIGVKRCRRNGEEAGIEEANQTLSSSQEPDGVGLI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0123 285 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0123 285 Coils Coil 180 200 - -
Dere13g0123 285 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Dere13g0123 285 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0123 285 Gene3D - 23 121 IPR036388 -
Dere13g0123 285 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 215 IPR027725 -
Dere13g0123 285 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0123 285 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0123 285 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere13g0123 285 MobiDBLite consensus disorder prediction 143 168 - -
Dere13g0123 285 MobiDBLite consensus disorder prediction 1 25 - -
Dere13g0123 285 FunFam Heat stress transcription factor B-4 23 121 - -
Dere13g0123 285 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0123 Dere-ChrDere13 2345754 2346715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0123 23 279 HSF AT4G11660 52.751 9.04e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere13g0123 HSF_DNA-bind 2.3e-32 CL0123