Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0121 ATGGTAGAGGTTAAAATGGAGCTGGAGCAGTTCTCGTTTGATTCTCCTAAAGGAGATGGACTCCCCTTATGTTTTTCTCCCCCTGTTTCTGGGAGAACAGGACGAGCCAGACGCTCAACAAAGGGATGCTGGAAAGAAGAAGAGGACAACCTTTTGATTGAGGCAGTCAAGAAGCACCACGGAAGGAACTGGAAGAAAATAGCTACATACCTCCCAGGGAGAACTGATGTTCAATGCTTGCATCGCTGGCAAAAGGTTTTGAATCCAGAACTTGTAAAGGGATCATGGACAAGGGAGGAGGATGATTGTATCATTGAGCTAGTCAGAAAATACGGTTGTAAGAGATGGTCCATTATTGCTAAATCTTTACCAGGTCGTATTGGGAAGCAATGCCGAGAGAGGTGGCACAATCACCTAGACCCAGCTATAAAGAAAGATGCATGGACAGAAGAGGAGGAATCCGTACTTGCTACCTATCACCAAATATATGGTAGTAAATGGGCAGAAATTGCAAGGTTTCTTCCTGGAAGGACCGACAATGCTATTAAAAATCATTGGAACTGCTCAATGAAGAAGAAGTTGGATGCATCTTCACCTTGTGGATGTGACATAAATACTTGTGATTTCCACACTTCTCGAATCAATATATTGGTCAAAAAAGGGGGTGAGAGCCTCAGTCAAATGGTTTCTCCCGGTCGGAGCTTCCGGTTGAAGCGCAATGTTGATAACTCATTGGCAGAATTTATTCCTCGAAGTGCTTCTGAAGAGAAATTTTGCTTAGAAAGAAGTTGTTGCGAGGGGAGTTCTTCTTCAGATGCAGACTTTGTCGAGGGTGGCAGATCTTGCAGTCCTGTTTTGAGTTACCCAACATCGGCCTATTATACGGAGAAAGCTCAAGTTGAAACCAAAAACAAAATCAAGAGGACGCAAAGTCGAAATTACTACTCTGCAGAGCTACCCCTGGTGGATGATTTGACTTCCCCCACAGAATCTATTGAATTTCCAAATACGGAAAATCTCGTAGGCGGAAGTAGCCCCGAGTCTATTCTAAGAAGCTTAGCTATGACATATGAGAATATTCCTTCCATCATTAGGAAGAGAACTTCCCGGAAAACTCGTAGTATTCCTGACGATTGTGACGCCACGCATGCACCTTTGCAGATGATCTTGTGTTCTCGAGAAGCTAAAGAAATTAGTTCTAATAGCTTAGCCAATTTGAAATCGAAGCAGGGTGGTTTCATGTCCTTCTTTCACGAACCAAAAATATCCCCAATATCTAGATCTCTTCAGCGGCGTATGGAATTTGCTTGTAATCTTGACATATAA 1326 0.4306 MVEVKMELEQFSFDSPKGDGLPLCFSPPVSGRTGRARRSTKGCWKEEEDNLLIEAVKKHHGRNWKKIATYLPGRTDVQCLHRWQKVLNPELVKGSWTREEDDCIIELVRKYGCKRWSIIAKSLPGRIGKQCRERWHNHLDPAIKKDAWTEEEESVLATYHQIYGSKWAEIARFLPGRTDNAIKNHWNCSMKKKLDASSPCGCDINTCDFHTSRINILVKKGGESLSQMVSPGRSFRLKRNVDNSLAEFIPRSASEEKFCLERSCCEGSSSSDADFVEGGRSCSPVLSYPTSAYYTEKAQVETKNKIKRTQSRNYYSAELPLVDDLTSPTESIEFPNTENLVGGSSPESILRSLAMTYENIPSIIRKRTSRKTRSIPDDCDATHAPLQMILCSREAKEISSNSLANLKSKQGGFMSFFHEPKISPISRSLQRRMEFACNLDI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0121 441 CDD SANT 95 139 IPR001005 -
Dere13g0121 441 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
Dere13g0121 441 PANTHER MYB PROTEIN-RELATED 41 113 - -
Dere13g0121 441 ProSiteProfiles Myb-like domain profile. 88 139 IPR001005 -
Dere13g0121 441 CDD SANT 44 87 IPR001005 -
Dere13g0121 441 FunFam Transcriptional activator Myb isoform A 93 145 - -
Dere13g0121 441 SUPERFAMILY Homeodomain-like 39 101 IPR009057 -
Dere13g0121 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 87 IPR017930 -
Dere13g0121 441 FunFam Transcriptional activator Myb isoform A 40 92 - -
Dere13g0121 441 Pfam Myb-like DNA-binding domain 145 187 IPR001005 -
Dere13g0121 441 Pfam Myb-like DNA-binding domain 41 87 IPR001005 -
Dere13g0121 441 Pfam Myb-like DNA-binding domain 93 139 IPR001005 -
Dere13g0121 441 Gene3D - 93 144 - -
Dere13g0121 441 SMART sant 144 192 IPR001005 -
Dere13g0121 441 SMART sant 40 89 IPR001005 -
Dere13g0121 441 SMART sant 92 141 IPR001005 -
Dere13g0121 441 SUPERFAMILY Homeodomain-like 90 186 IPR009057 -
Dere13g0121 441 Gene3D - 146 203 - -
Dere13g0121 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 194 IPR017930 -
Dere13g0121 441 CDD SANT 147 187 IPR001005 -
Dere13g0121 441 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Dere13g0121 441 Gene3D - 40 92 - -
Dere13g0121 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 143 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0121 Dere-ChrDere13 2335443 2339082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0121 32 367 MYB Transcription Factor Family AT5G02320 43.316 1.81e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g0121 Myb_DNA-binding 5e-17 CL0123