Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0108 ATGTCGTTCAGTGGAACCCAACAGAAATGCAAGGCTTGCGACAAAACCGCTCATTTCATCGACTCCATATCAGCAGATGGTGCCGTTTATCACAAAACTTGCTTCAAATGCAGTCAATGTAACGGCGTCCTTGCGATAAGCACCTACTCGTCGTTGGATGGAAATTTGTACTGCAAGCCTCATTTTGAGCAAGTTTTGAAGAGCACTGGTGGGGTCGCTAGGAAATCTCTAACCTTTGTGTCATTTCATTTCATTTCATATGGTTTTGAAATGCTTTTACAGACAAGGGCACCCAGCAAGCTGTCGGCCTTGTTCTCTGGAACTCAAGACAAATGCGCATCTTGCAAGAAAACTGTTTACCCACTGGAAAAGGTGACAGTAGAAGGAGAATTTTTTCACAAATCGTGCTTCAGGTGTGCTCATGGAGGGTGTTTTCTGAGCCCTTCAAACTATGCAGCTCTGGATGGGTTTCTATACTGCAAGCCCCATTTTGCCCAATTGTTCAAAGAGAAAGGCAGCTATAATCATATGGTTAAGTCTGCTTCCTTGAAGAAAAACGAACTCCAACAAGCAGCCGAGAAGGCCGAAGCCGAAGCCGAAGCCAACTCTGCATCGGAATCGGAGTCAGCGCCCAAGGAACAAGACGATGCTGCTGATTAGATTTGGGCAGTATCTGTAGATCCACGTTATAAACTGCCGCCACGTCACTCTCGGCAGGATAACCCCTTCCTCTTTTCGCCAGCCGTTTATCCCCAGCAAATTCGCAGAATCCTGTCTTCCTGTAAGCTCAATCACAAGTTAACCTTTGGCCAAAAGAAACAATCACAAGAAAACCCACACGATATAGAAGAACAGTGA 858 0.4569 MSFSGTQQKCKACDKTAHFIDSISADGAVYHKTCFKCSQCNGVLAISTYSSLDGNLYCKPHFEQVLKSTGGVARKSLTFVSFHFISYGFEMLLQTRAPSKLSALFSGTQDKCASCKKTVYPLEKVTVEGEFFHKSCFRCAHGGCFLSPSNYAALDGFLYCKPHFAQLFKEKGSYNHMVKSASLKKNELQQAAEKAEAEAEANSASESESAPKEQDDAADXIWAVSVDPRYKLPPRHSRQDNPFLFSPAVYPQQIRRILSSCKLNHKLTFGQKKQSQENPHDIEEQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0108 285 CDD LIM2_SF3 112 172 - -
Dere13g0108 285 SMART lim_4 9 61 IPR001781 -
Dere13g0108 285 SMART lim_4 111 163 IPR001781 -
Dere13g0108 285 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 178 - -
Dere13g0108 285 ProSiteProfiles LIM domain profile. 110 170 IPR001781 -
Dere13g0108 285 Coils Coil 178 205 - -
Dere13g0108 285 Gene3D Cysteine Rich Protein 2 70 - -
Dere13g0108 285 PANTHER OS06G0237300 PROTEIN 96 213 - -
Dere13g0108 285 FunFam LIM domain and actin-binding 1 4 74 - -
Dere13g0108 285 Pfam LIM domain 112 167 IPR001781 -
Dere13g0108 285 Pfam LIM domain 10 64 IPR001781 -
Dere13g0108 285 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 71 - -
Dere13g0108 285 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Dere13g0108 285 FunFam LIM domain and actin-binding 1 106 176 - -
Dere13g0108 285 MobiDBLite consensus disorder prediction 189 218 - -
Dere13g0108 285 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Dere13g0108 285 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Dere13g0108 285 Gene3D Cysteine Rich Protein 106 176 - -
Dere13g0108 285 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0108 Dere-ChrDere13 2219484 2224264 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dere13g0108 LIM 4.2e-11 CL0167