Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0104 ATGAGACAAGCAGGAGCATATTCAGGATTATACAGTGGGGGTATAAATGGAAAAATGGGGCCTCACTCGATGCCGTTGGCGAGAATAAAGAAGATAATGAAGAAGTCAGGGGAAGAGGTGAAGATGATATCAGGAGAGGCTCCTATTGCTTTTGCCAAAGCATGCGAGCTCTTCATTGAGGAACTTACCAGAAGGTCCTGGATGACGACCGCCCAGTCCAAAAGGAGAACTCTTCTCAAAGACGACGTCGCTTCCGCCATTATTGCCACTGATCTGTTCGACTTCTTGATCACTCTTGTTTCTAATTCTCCCACTCCCCACCACTAA 327 0.4679 MRQAGAYSGLYSGGINGKMGPHSMPLARIKKIMKKSGEEVKMISGEAPIAFAKACELFIEELTRRSWMTTAQSKRRTLLKDDVASAIIATDLFDFLITLVSNSPTPHH 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0104 108 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Dere13g0104 108 SUPERFAMILY Histone-fold 15 96 IPR009072 GO:0046982
Dere13g0104 108 Gene3D Histone, subunit A 13 102 IPR009072 GO:0046982
Dere13g0104 108 FunFam Nuclear transcription factor Y subunit C 13 102 - -
Dere13g0104 108 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0104 Dere-ChrDere13 2173051 2173377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0104 22 100 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.291 3.56e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere13g0104 CBFD_NFYB_HMF 9.7e-18 CL0012