Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0101 ATGAAATTATGTACTTCACTGTTGTTTATCGGTTTAATTTCCACGGTCTCCTTTGTGACTAGTGATACTGTCGCCTCAAATGAAGTTTTAGCGCTTACGACTTTCAAAGAAGCTATTTATGAGGATCCATTTCTAGTTTTGTCCAATTGGAATACGATGGATTCAGATCCTTGTAACTGGAATGGCGTTTCTTGCAATCCGCGCCGAGATCATGTTGTTAAGCTAAACATTTCGGGATCGTTATTAAGGGGATTTCTAGCACCAGAATTAGGACGAATCACGTATTTGGAAGAATTGATTTTGCACGGCAATAAACTGATTGGAACGATACCTAAAGAGTTGGGCATGTTGAAAACTCTCAAGGTCTTGGATTTGGGGATGAATCAGCTATCAGGACCAATTCCTCCAGAGATTGGAAATTCAACCCAATTAGTGAAAATAAACCTGCGGTCCAACGGGTTGACTGGCAGACTACCTCCAGATCTTGGAAATTTGAGATACCTTCAAGAACTGAGGCTAGATAGGAATAAGCTTCAAGGACCTGTTCCTGCTGATAGTAGTTCAAATCTTTCTTCAAATATGCAAGGAAAGTATGCCTCAAATGCAAATTTAACTGGCTTCTGTCGTTCGTCTCAGTTAAAAGTTGCAGATTTTTCTTATAACTTCTTTGTTGGTAGCATCCCAAAATGCTTGGAGTATCTTCCAAGGTCAAGCTTTCAAGGGAATTGCCTCCAGATCAAGGACTTAAAGCAACGCTCTTCTGTGCAATGTGCTGGTGCTTCACCTGCCAAGAGCCATCCAGCGATCAATTCAAAGCACCAACCGGCTGATTATTTGTCCAAGCATCAAGGAGCATCAAAACCTACTTGGCTTTTGGCTCTAGAAATAGTGACAGGAACCATGGTTGGTTCTCTCTTTCTAATTGCTCTTCTATCTGCTCTTCAGAGGTTTAACAACAAATCATCTATCATTATTCCTTGGAAGAAATCTGCAAGCGAGAAGGACCATACGACAGTATATATAGACTCAGAGATGTTGAAGGATGTAAGGAGGTATAGCAGACAAGAGCTTGAAGTTGCCTGTGAAGACTTCAGCAACATCATTGGATCCTCGCCTGACAGTGTGGTCTACAAGGGCACCATGAAAGGTGGGCCTGAGATTGCTGTAATTTCCCTCTGCATTAAGGAAGAGCATTGGACAGGTTACCTCGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGATAAATCACGAGAATACTGGAAAACTACTGGGATATTGTAGAGAGAGCACACCATTTACAAGGATGCTGGTTTTTGAGTACGCTTCAAATGGGACACTTTATGAGCACCTACATTATGGAGAAGGATCCCAGTTATCATGGACACGGCGTATGAAAATCGTTATAGGCATTGCACGAGGTCTCAAGTATCTGCACACAGAAGTTGAGCCTCCATTCACTATATCAGAGCTAAATTCTAGTGCTGTATACCTTACAGAAGATTTTGCCCCTAAGCTGGTTGATTTTGAAAGTTGGAAGACTATTCTGGAAAGATCAGAAAAGAATTCTGGTTCTGTTAGCAGCCAAGGTGCCGTTTGTATTCTTCAAAATTCCCTAGAGGCACGCCATCTTGATATCCAAGGAAACATATATGCTTTTGGTGTACTTCTATTGGAGATAATCAGCGGAAGATCTCCCTACTGCAAGGACAAAGGGTACTTGGTCGATTGGGCGAAGGAATATCTTGAAATGCCTGAAGTAATGCCATATTTGGTGGATCCCGAATTGAAACATTTTAGATATGACGACCTTAAAGTAATATGTGAGATTATAAATCTCTGCATCAATCCGGACCACACAAGGCGTCCAGCGATGCAAGAACTATGTAGTTTGCTGGAGAGCAGAATTGACACATCCATAACTTCGGAGCTCAAGGCATCATCTTTGGCTTGGGCTGAACTTGCACTTTCATCATGA 1983 0.4196 MKLCTSLLFIGLISTVSFVTSDTVASNEVLALTTFKEAIYEDPFLVLSNWNTMDSDPCNWNGVSCNPRRDHVVKLNISGSLLRGFLAPELGRITYLEELILHGNKLIGTIPKELGMLKTLKVLDLGMNQLSGPIPPEIGNSTQLVKINLRSNGLTGRLPPDLGNLRYLQELRLDRNKLQGPVPADSSSNLSSNMQGKYASNANLTGFCRSSQLKVADFSYNFFVGSIPKCLEYLPRSSFQGNCLQIKDLKQRSSVQCAGASPAKSHPAINSKHQPADYLSKHQGASKPTWLLALEIVTGTMVGSLFLIALLSALQRFNNKSSIIIPWKKSASEKDHTTVYIDSEMLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEHWTGYLELYFQREVADLARINHENTGKLLGYCRESTPFTRMLVFEYASNGTLYEHLHYGEGSQLSWTRRMKIVIGIARGLKYLHTEVEPPFTISELNSSAVYLTEDFAPKLVDFESWKTILERSEKNSGSVSSQGAVCILQNSLEARHLDIQGNIYAFGVLLLEIISGRSPYCKDKGYLVDWAKEYLEMPEVMPYLVDPELKHFRYDDLKVICEIINLCINPDHTRRPAMQELCSLLESRIDTSITSELKASSLAWAELALSS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0101 660 Gene3D Ribonuclease Inhibitor 25 268 IPR032675 -
Dere13g0101 660 Pfam Protein tyrosine and serine/threonine kinase 366 633 IPR001245 GO:0004672|GO:0006468
Dere13g0101 660 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Dere13g0101 660 ProSiteProfiles Protein kinase domain profile. 362 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0101 660 Gene3D Transferase(Phosphotransferase) domain 1 444 650 - -
Dere13g0101 660 FunFam Inactive receptor-like serine/threonine-protein kinase 336 443 - -
Dere13g0101 660 SUPERFAMILY L domain-like 27 235 - -
Dere13g0101 660 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Dere13g0101 660 SUPERFAMILY Protein kinase-like (PK-like) 339 634 IPR011009 -
Dere13g0101 660 Gene3D Phosphorylase Kinase; domain 1 334 443 - -
Dere13g0101 660 PANTHER PROTEIN MALE DISCOVERER 2 17 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0101 Dere-ChrDere13 2140453 2144589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0101 3 635 Receptor kinase-like Gene Family AT2G01210 26.823 4.69e-56 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Dere13g0101 PK_Tyr_Ser-Thr 1.2e-20 CL0016