Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0092 ATGAGTGGGAACTGGAATTGGGAATGGGGTGCTGGTGTTGAACAGTCAGTAGTACATAGTGCCAATTCTAAAGCAGAGACTCACTGCCGACTTGGGGTTGAGGAGTTAGTATATTTTCGCAAATCTCTTAGTAAATGCATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGCACAGCTTCATATTACATACATAGAGGAAATGTTTCTGGGTCTGGCGCTGGAACACAGGGCCAGGGGTTCCAACAATCACCCCCTGGGTTTAGACCCTTGTCAAACGTTGGCTTTCAATCTCAGTCAAATGTCCGAGGTGGTTCTGTCGGTTCTACATTTTCAGTAGAGCCTCCTCGTACCAATTTTAGCCATGGAATTAACATAGGTTCCTCTCCTGGAGTACCTTCAGGGGAGCCCTTGAAAAAGAAAAGAGGAAGGCCGCGTAAATATGGTCCTGATGGCCCTGTTTCTTTGGGACTGTCTCCCATGTCTGCAACTGCGAATTCTACCCCAGGTTCAAGCACACCTTCCCAGAAACGGAATAGAGGACGCCCACCTGGAAGTGGAAGGAAGCAGCAACTAGCGTCTCTAGGTGAATGGATGAACAGTTCAGCAGGACTTGCCTTTGCACCTCATGTTATCACCATTGGAGCTGGGGAGGACATTGTAGCAAAGTTATTATCCTTATCACAGCAGAGACCAAGGGCTCTGTGCATCATGTCAGGCACTGGCACAGTTTCTTCAGTTACTCTACGCCAGCCTGCTTCGACTAGTGTCAGTCTCACTTATGAGGGCCGATTTCAAATTTTATGCTTGTCTGGTTCATACTTGGTTGCTGAAGATGGTGGACCTCGTGATAGAACTGGTGGTTTGAGTGTTTCCCTTTCTAGCCCTGAGGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGCAAGCCCGGTCCAGGTGGTGGTGTGTAGTTTTGTATATGGAAGCGCTAAGACAACGAAGAAGCAAATGGCCTCCCCCAAGGGTGAGAATTCTGAGGCTCAGGCTCAGGCTCAAACTCAGAATGATGGTAACAAGTTAAGTACTCCTATTACTCCAGCAAGTGCTCAAAACTACACATTGTCTGCATCAGCGATTTGGCCAGGAGATATGAAAAGTGCACACACTCACACTCGCACTGGTATTGACTTGACGCGTGGCTGA 1191 0.4811 MSGNWNWEWGAGVEQSVVHSANSKAETHCRLGVEELVYFRKSLSKCMDGREAMAFSGGTASYYIHRGNVSGSGAGTQGQGFQQSPPGFRPLSNVGFQSQSNVRGGSVGSTFSVEPPRTNFSHGINIGSSPGVPSGEPLKKKRGRPRKYGPDGPVSLGLSPMSATANSTPGSSTPSQKRNRGRPPGSGRKQQLASLGEWMNSSAGLAFAPHVITIGAGEDIVAKLLSLSQQRPRALCIMSGTGTVSSVTLRQPASTSVSLTYEGRFQILCLSGSYLVAEDGGPRDRTGGLSVSLSSPEGHVIGGGVAVLIAASPVQVVVCSFVYGSAKTTKKQMASPKGENSEAQAQAQTQNDGNKLSTPITPASAQNYTLSASAIWPGDMKSAHTHTRTGIDLTRG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0092 396 Gene3D - 209 336 - -
Dere13g0092 396 ProSiteProfiles PPC domain profile profile. 201 345 IPR005175 -
Dere13g0092 396 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 101 362 IPR039605 GO:0003680
Dere13g0092 396 CDD DUF296 209 321 IPR005175 -
Dere13g0092 396 SUPERFAMILY AF0104/ALDC/Ptd012-like 207 325 - -
Dere13g0092 396 MobiDBLite consensus disorder prediction 73 128 - -
Dere13g0092 396 MobiDBLite consensus disorder prediction 73 192 - -
Dere13g0092 396 MobiDBLite consensus disorder prediction 159 180 - -
Dere13g0092 396 MobiDBLite consensus disorder prediction 330 362 - -
Dere13g0092 396 Pfam Plants and Prokaryotes Conserved (PCC) domain 209 322 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0092 Dere-ChrDere13 2084853 2090016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0092 47 396 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 51.562 5.15e-104 310