Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0091 ATGAGAATCCGGCCCAATGTGTGTTTGTCTGTGCATTCTGTACGGAGTTATGAATTCTTTGTGATTCCAATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGATGTAGTAGGGCAGAGTCTTGGTGTTTCATCTTCCGGGTCACTGAATATACCGTCAGGACCTGTATATTTTCCTACGGAGGATGAGTTCAAGGACCCCTTGGAATATATTTATAAGATTAGACCTGAGGCTGAGCCATATGGAATTTGTAAGATTGTGCCACCAAAGAGTTGGAAACCCCCATTTGTTTTGGATCTAGACTCTTTCACTTTTCCCACTAAAACACAAGCAATTCACAAGTTACAGGCACGTCCTGCTGCATGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTAGAGGATCATTGTGGTAAAAAGTCAAAGAAGAGAGTTGTATTTGAAGGGGAAGAACTGGACCTGTGCAAATTATATAATGCTGTTAAGCGTTTTGGTGGATATGATAAGGTCGTCAAGGAAAAGAAATGGGGGGATGTTTCTCGGTTTGTAAGGCCAGGTAGAAAAATTACAGACTGTGCAAAGCATGTCTTATCCCAGTTGTACCGTGAACATTTGAATGATTATGAGAATTTCTATAATCAGCTGAATCAAGAGACAGCTCGCAGAAGTAAGAAATGCATGCATGAGGATGAGAAAAGTGATCATGGGGTCCGATCTTCAGGATCCAAGAGGATAAGAAGGAGTGTTGATTGTTTGAAAGTTAAGGATTGTAAAGTACAGGAGGAAGAACATGACCAGATTTGTGAGCAATGCAGAAGTGGGTTGCATGGGGACGTGATGCTTTTGTGTGATAGGTGTGACAAGGGCTGGCATATATATTGTCTTTCTCCACCACTGAAGCAAATTCCTCCAGGAAACTGGTATTGCTTTAATTGCTTGAATTCTGATAGGGACAGCTTTGGTTTTGTGCCTGGTAAGCAGTATACCTTGGAAGCCTTTAGACGCATGGCTGATCGGTCAAGGAGGAGATGGTTTGGACCAGGACCTGTTTCAAGGGTGCAGATAGAGAAGAAGTTTTGGGAGATTGTAGAGGGATCGGTTGGTGAGGTTGAGGTTATGTATGGAAGTGATTTAGATACGTCTGTCTTTGGAAGTGGTTTTCCACGCCTGATTGATGAAAAACCACAATCAATTGATGCAAAGCTATGGGATAAATACTCAACTAACCCGTGGAATCTTAATAACTTGCCTAAATTGAAAGGGTCAATGCTTCAAGCTGTTCAGCACAATATCACTGGTGTGATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCGATGAATTATCTGCATTGGGGAGAGCCAAAATGTTGGTACAGTGTTCCTGGTAGTGAAGCAAGTGCTTTTGAAAAGGTGATGAGGAGCAGCCTTCCTGATCTTTTCGATGCACAACCAGATCTGCTTTTTCAGCTTGTAACCATGTTAAACCCTTCTGTCTTGCAACAAAATGGAGTTCCAGTCTACAGTATTCTTCAGGAGCCTGGGAATTTTGTTATCACCTTCCCCAGATCTTACCATGGAGGTTTTAATCTTGGTTTAAATTGTGCGGAGGCAGTTAATTTTGCTCCTGCTGATTGGCTACCTTATGGTGCATTTGGAGCTGATCTCTACCAGAGATATCACAAAACTGCTGTCTTGTCTCATGAAGAACTTATTTGCGTAGTAGCACAGTATAGTGACACTGATAGCAAAGTATCTCCTCATTTAAAGAATGAATTGCTTCGGATATTTGATAAAGAGAAATCATGGAGAGAAAAACTGTGGAGAAATGGTATCATCAAATCATCTCCCATGGCTCCCCGTAAATGTCCCCAATATGTGGGAACTGAAGAGGATCCGGCATGCATTATTTGCCAGCAGTATCTATATCTTTCTGCTGTTGTGTGCAGTTGTAGGCCATCTTCTTTTGTATGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTAAAACTATGTCTTCTCTATCGTCATTCACTTGCAGAATTGTATGACTTGGCACTTTCTATGGACAAGGATACTTCTAAGGAGAAAGCACTGTGTAGAAATATTAGAAGGCAGTCTTCATGTCTGGGAGCTTCGACAAAAAAGGTAAAAGGTGGTTCCATTACTTTCACACAGCTTGCTGCACAATGGCTTATGCAATCTACTAAGATTCTCCAGAATCCTTTTTCGAGTGATGCTTTTATTTCTGCACTAAAGGAAGCTGAACAGTTTCTTTGGGCTGGTCCTGAGATGAATTCTGTTCGAGATATGGTGAAGAATTTGATTGAAGCTCTGAAGTGGGCAGAAGGGATAAGAGATTGTTTAAATAAAATTGAGTCCTGGTTGTGTCATCAGGACTCCGGAGTAGAGAGAGTTCACTTAGAATTTGTTGATGAGTTGCTGACAGTTAATTCTGCACCATGCAATCAGCCTGCTTATCATAAATTGAAGGAATATACAGAAGGGGCAATGTTGTTAATTCAGGATATTAATGTTATTTTGTCAATGTGTTCAAAGATGTCTGAGTTGGAATCTTTACACTCTAGAGCTTGTGCTTCGCCAATCTATGTGAAAGAGGTCGAGAATTTAGCAAGGAAAATTTCTTCAACTAAGGCATGGCTGCAGAGAGTTAGAAGGTGCATCTCAGTAAAACACCCTGCTAAAGTAGAGGTTGATGTTCTTTACAAGTTGAAGTCAGAGATTGTGGAGCTTCAAGTACAACTTCCAGAGATGGAAGTGATTCAGAATATGTTACGTCAAGCTGAATCTTGTAGTGCAAAATGTAGTGAGATGTTAGCAGGTCCTATGAATCTAAAGAAAGTCGGTTTGCTGCTTAAGGAATGGGAGAGCTATACGGTTGATGTGCCAGAGTTGAAACTTCTAAGGCAATATTATGAGGATGCTGTTTCATGGGTTTCCAACTTTACTCGTGTTTTAGGGATGATGCATGAACGGGATGATCAACATAATGTTGTTAAAGAATTGAAGGGTATTTTAGAAGATGGTTTATCTTTAAAAATTCAAGTTGATGAATTGCCATTAGTTGAGATTGAGCTGCAGAAGGCTTTTTGTCGGGAAAAGGCTCTGAAGGCGCACAACTCTAGGATGTCTTTGGAATTTATTCAGCAAGTGATGAAGGAAGCTGTACTGCTACAAATTGAGGGAGAGAAATTATTTGTTGGTTTATCTGCTGTACTTGATGTTGCTATACCTTGGGAGGAAAGGGCTAGAGAGATTCTAACCCATAAGGCTTCTGTTTCTGACTTTGAGGACATGATCAGGGCCTCAGAAAGCATATTTGCGATTCTTCCTTCCATTATAGATGTCAAAGAAGCACTATTGGAAGCTAATTCCTGGTTAACCAATTCAAAACCCTTTTTGGTTCCTTCTGCTTGTGCATCTGATTCTCTGCGGAAAGTTGAGGACCTTCAGATGCTAGTAACTCAATCGAAGCTTCTTAAAGTATCTTTGAAAGAAATGAAGATGCTTGAAATACTTTTGAAGAACTGCAAAGAATGGAAGTCTGAGGCATGTTCTCTGCTGGAAGATGCTTGGTCTATATTTGAATTGGATGATATTGTTCATGGACTAAGCAGTGGATTAATGTCCAAAGTTGAAGGTTTGATTGCCGGAATGCAATCTACCACAAGATCTGGTTTGTCACTTGGTTTTGACTTTGACAAGATTCCAAAACTTAAAGCAACTTGTTCAACACTGCAGTGGTGTAAAAAGATCCTTTCATTCTGCAATCTTTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCAGAAGAGCTTCCACTTTTGTGTGGTTCTGGTGCCCTGTTGAATCTACTGATTGGTGGAGTTAAATGGCTTAGGCAAGCCCTAGAAGTAATTTCAGGGCCACACAATTCTAGAAGAAGCAAGTTATGTGAAGTTGAAGATATTATTACTGACTATCAGACTATTAATATGCCTTTTGCAGCAGTAATCTGCCAACTAGAAGAAGCTATTGGAAAACATAAGTTGTGGCAAGAACAGGTGCATCAATTCCTTAGTCTATGTTCCAGGGAACGATCGTGGTTATCAATGTTGAAGCTCAAGGAACTTGGAGATACCATTGCCTTCAGTTGCTCAGAACTGAATTTGATTTTATCTGAAGTTGAGAAGGTGGAGAATTGGAAGAAACGCTGCATGAATTTCGTAGGAACTCTATTCCAAAATGAGGATTCACTGCTTGATGCTCTGCAGAAGATGAAACAGAGTCTAGATGGATCATTATTCATATATGGCAAATTGAAAGACTGGAAGGGACAATATTTATGCATCTACTGCTTTACCAATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTAAAAACTGTTATCATTTGCGGTGCATTGGCCCAACAATGGACAATAGCCACGAAGCTTATACATGCCCTTATTGTAAAATTTTGAAGGGTGAATCCAATTATAATGGAAGTCTCCCCCTGAGGTTTGGGGAGAAGCGTGCTGAACTAAAAGTTCTTCTTGAACTTCTTTCTGATGCTGAACATTTCTGTGCATGGATTGATGAAATAGATGTTCTCAACCAACTTGTTGAGCAAGCCCTTGCATGCAGGTCTTGCTTGAGAGAAATAGTGAACCTTGCATCAGCTAATGTTGAAAATGATATTAGCACCATCTCTGAAAAATTGACCATTGCTATAAAGGCCAGTGAAGTGGCTGGTGTCTGTGATCAGCATGATATAAATGACCTTGAGTTAGCTTTAGCGAGACATCTGTGGAAAATTCAAGTCAATGGACTACTAAACTGTCTACAAAAGCCGACTATTCAACAGATTCAGAGGCATATGAAAGAGGGACTGGCTGTGGAAATATCATCTGAAGATCATTACATGCTGAAACTAACAAAAGTGAATTGCTTATATTTGCAGTGGGCAGGACTAGCCAAGAAGGTTGCAGTTGATACTGAGGCACTCAGCCTTGATAAAGTTTTTGATCTCATTGTAGAAGGTGAGAACTTGCCTGTTGATGTGGACGAGGAACTCAGGATATTAAGGGCTCAAAGTATGCTTTATTGCATTTGTAGAAAGCCCTTTGATCCGAGAAGTATGATTGCATGCGATCAATGTGGTGAGTGGTATCACTTTGATTGCATGAAATTACCATGCAATCAAGAAGTCTATGTTTGTCCTGCATGTAAACCCTGTACAGAAGGAATGCCAACAACGTCGCTGGACCGAGAGAGATTTAGTGCTAAACTCGAGGAACCTAAAACCCCATCTCCAAGGCATACAAAACCAAGAAAGAAACGGAAGAGAAATATACCCGGTCCCAGTCACAAGATGTTTGCAAGCGAGGATCAAAATAGTAATTTTAGATATTCCAGTGGGATAGAATGTCTTAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGAACTTAGAAGTCTTTCGTCATTTTTACGTATACACAACAGTAACTGA 5583 0.405 MRIRPNVCLSVHSVRSYEFFVIPMGKGRPRAVEKDVVGQSLGVSSSGSLNIPSGPVYFPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFVLDLDSFTFPTKTQAIHKLQARPAACDSKTFELEYSRFLEDHCGKKSKKRVVFEGEELDLCKLYNAVKRFGGYDKVVKEKKWGDVSRFVRPGRKITDCAKHVLSQLYREHLNDYENFYNQLNQETARRSKKCMHEDEKSDHGVRSSGSKRIRRSVDCLKVKDCKVQEEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKQYTLEAFRRMADRSRRRWFGPGPVSRVQIEKKFWEIVEGSVGEVEVMYGSDLDTSVFGSGFPRLIDEKPQSIDAKLWDKYSTNPWNLNNLPKLKGSMLQAVQHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQQNGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELICVVAQYSDTDSKVSPHLKNELLRIFDKEKSWREKLWRNGIIKSSPMAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTVKLCLLYRHSLAELYDLALSMDKDTSKEKALCRNIRRQSSCLGASTKKVKGGSITFTQLAAQWLMQSTKILQNPFSSDAFISALKEAEQFLWAGPEMNSVRDMVKNLIEALKWAEGIRDCLNKIESWLCHQDSGVERVHLEFVDELLTVNSAPCNQPAYHKLKEYTEGAMLLIQDINVILSMCSKMSELESLHSRACASPIYVKEVENLARKISSTKAWLQRVRRCISVKHPAKVEVDVLYKLKSEIVELQVQLPEMEVIQNMLRQAESCSAKCSEMLAGPMNLKKVGLLLKEWESYTVDVPELKLLRQYYEDAVSWVSNFTRVLGMMHERDDQHNVVKELKGILEDGLSLKIQVDELPLVEIELQKAFCREKALKAHNSRMSLEFIQQVMKEAVLLQIEGEKLFVGLSAVLDVAIPWEERAREILTHKASVSDFEDMIRASESIFAILPSIIDVKEALLEANSWLTNSKPFLVPSACASDSLRKVEDLQMLVTQSKLLKVSLKEMKMLEILLKNCKEWKSEACSLLEDAWSIFELDDIVHGLSSGLMSKVEGLIAGMQSTTRSGLSLGFDFDKIPKLKATCSTLQWCKKILSFCNLSPSLEDVLEVAEELPLLCGSGALLNLLIGGVKWLRQALEVISGPHNSRRSKLCEVEDIITDYQTINMPFAAVICQLEEAIGKHKLWQEQVHQFLSLCSRERSWLSMLKLKELGDTIAFSCSELNLILSEVEKVENWKKRCMNFVGTLFQNEDSLLDALQKMKQSLDGSLFIYGKLKDWKGQYLCIYCFTNSEDQEFLTCSTCKNCYHLRCIGPTMDNSHEAYTCPYCKILKGESNYNGSLPLRFGEKRAELKVLLELLSDAEHFCAWIDEIDVLNQLVEQALACRSCLREIVNLASANVENDISTISEKLTIAIKASEVAGVCDQHDINDLELALARHLWKIQVNGLLNCLQKPTIQQIQRHMKEGLAVEISSEDHYMLKLTKVNCLYLQWAGLAKKVAVDTEALSLDKVFDLIVEGENLPVDVDEELRILRAQSMLYCICRKPFDPRSMIACDQCGEWYHFDCMKLPCNQEVYVCPACKPCTEGMPTTSLDRERFSAKLEEPKTPSPRHTKPRKKRKRNIPGPSHKMFASEDQNSNFRYSSGIECLRWQNRKPFRRAAKKRVELRSLSSFLRIHNSN 1860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0091 1860 SMART cupin_9 407 573 IPR003347 -
Dere13g0091 1860 PANTHER LYSINE-SPECIFIC DEMETHYLASE 50 950 - -
Dere13g0091 1860 ProSitePatterns Zinc finger PHD-type signature. 1466 1509 IPR019786 -
Dere13g0091 1860 SMART bright_3 122 216 IPR001606 GO:0003677
Dere13g0091 1860 CDD ARID 123 211 - -
Dere13g0091 1860 SMART PHD_3 269 315 IPR001965 -
Dere13g0091 1860 SMART PHD_3 1465 1510 IPR001965 -
Dere13g0091 1860 SMART PHD_3 1720 1762 IPR001965 -
Dere13g0091 1860 ProSitePatterns Zinc finger PHD-type signature. 1721 1761 IPR019786 -
Dere13g0091 1860 Pfam PHD-finger 269 316 IPR019787 -
Dere13g0091 1860 SMART JmjN_1 53 94 IPR003349 -
Dere13g0091 1860 MobiDBLite consensus disorder prediction 1779 1814 - -
Dere13g0091 1860 SUPERFAMILY FYVE/PHD zinc finger 263 317 IPR011011 -
Dere13g0091 1860 Pfam C5HC2 zinc finger 650 701 IPR004198 -
Dere13g0091 1860 Pfam ARID/BRIGHT DNA binding domain 131 211 IPR001606 GO:0003677
Dere13g0091 1860 ProSiteProfiles ARID domain profile. 121 215 IPR001606 GO:0003677
Dere13g0091 1860 ProSiteProfiles JmjN domain profile. 54 95 IPR003349 -
Dere13g0091 1860 MobiDBLite consensus disorder prediction 1791 1805 - -
Dere13g0091 1860 SUPERFAMILY ARID-like 104 221 IPR036431 GO:0003677
Dere13g0091 1860 CDD PHD_RSF1 270 314 - -
Dere13g0091 1860 ProSiteProfiles JmjC domain profile. 407 573 IPR003347 -
Dere13g0091 1860 FunFam Predicted protein 375 578 - -
Dere13g0091 1860 SUPERFAMILY FYVE/PHD zinc finger 1462 1511 IPR011011 -
Dere13g0091 1860 Pfam JmjC domain, hydroxylase 440 556 IPR003347 -
Dere13g0091 1860 FunFam Transcription factor jumonji (JmjC) domain-containing protein 42 144 - -
Dere13g0091 1860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1707 1763 IPR013083 -
Dere13g0091 1860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1455 1511 IPR013083 -
Dere13g0091 1860 SUPERFAMILY FYVE/PHD zinc finger 1717 1769 IPR011011 -
Dere13g0091 1860 Gene3D Cupin 37 163 - -
Dere13g0091 1860 Pfam jmjN domain 55 88 IPR003349 -
Dere13g0091 1860 ProSiteProfiles Zinc finger PHD-type profile. 1463 1512 IPR019787 -
Dere13g0091 1860 SUPERFAMILY Clavaminate synthase-like 402 591 - -
Dere13g0091 1860 ProSiteProfiles Zinc finger PHD-type profile. 267 317 IPR019787 -
Dere13g0091 1860 Gene3D Cupin 296 579 - -
Dere13g0091 1860 ProSiteProfiles Zinc finger RING-type profile. 1466 1510 IPR001841 -
Dere13g0091 1860 ProSitePatterns Zinc finger PHD-type signature. 270 314 IPR019786 -
Dere13g0091 1860 SMART ARID_2 121 211 - -
Dere13g0091 1860 Pfam PLU-1-like protein 1166 1422 IPR013637 -
Dere13g0091 1860 Pfam PLU-1-like protein 917 1042 IPR013637 -
Dere13g0091 1860 Pfam PLU-1-like protein 1018 1214 IPR013637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0091 Dere-ChrDere13 2064137 2084322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0091 320 699 JUMONJI Transcription Factor Family AT1G08620 40.855 4.12e-92 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere13g0091 PLU-1 3e-18 No_clan