Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0086 ATGTTCAGCCGAAGGCCATGGTTTGGGATGGGTTGTGAATTTTCCAGGTTCTCAGCTTGCTGCTCGGGTATAGAGCAAAGTGGTCCAGTTCCTGAAGCCCACATCGATGAAAATGAAGAGAATAGTGAGGCCATTGATGTGCCGCCATTCCGTGAATACACAATTGATCAACTTAGGAAGGCTACTTCTGGATTTGCAGTCGAAAATATAGTTTCTGAGCATGGAGAAAAGGCTCCAAATGTGGTTTATAAAGGGAAACTAGAAAATCAAACGCGAATTGCTGTCAAACGGTTCAATAGATCAGCCTGGCCTGATGCCCGGCAATTTTTGGAAGAAGCCAGGGCTGTTGGTCAGCTGAGGAACCAAAGATTGGTAAATCTACTTGGATGTTGCAGTGATGGTGATGAGAGGTTGCTTGTTGCAGAATATATGCCCAATGATACTTTGGCAAAGCACTTGTTTCACTGGGATACTCAGCCCATGAAATGGGCAATGCGACTTAGAGTTGTTTTAAACCTTGCCCAAGCGCTAGAATATTGCACAAGCAAAGGACGTGCACTATATCATGATCTAAACGCTTACAGAGTACTTTTTGATGATGAAGGAAATCCTAGACTCTCATGTTTTGGTTTGATGAAAAACAGTCGAGATGGAAAAAGTTATAGTACGAACCTGGCATTTACTCCACCTGAGTATCTAAGGACAGGTAGAGTTACTCCAGAAAGTGTAACGTATAGTTTTGGAACACTTTTGCTTGACCTTCTTAGTGGAAAACATATTCCTCCAAGTCATGCACTCGACCTGATTCGGGACAGGAACCATCAGATGCTCGCAGATTCTTGTCTAGAAGGACAATTTTCAAATGATGAGGGGACTGAATTAGTGCGCTTAGCCTCACGATGTTTACAATCAGAACCACGGGAGCGTCCTAATCCGAAGTCATTGGTTACCGCTTTAATACCTCTACAGAAGGATTCCGAGGTTCCATCTCATGTTTTGATGGGTATACCACATGGTGCTACTGCTTTACCCCTTTCACCACTTGGTGAGGCTTGTCTAAGAATGGATTTGACTGCCATCCATGAGGTCATTGAAAAGATTGGGTATAAAGATGATGAGGGTGCTGCTACTGAGCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAGGGTGATTCTGCCTTTCGTCATAAAGACTTTAAAGCTGCAATTGATAGCTATACACAGTTCATTGACGTTGGAACCATGGTTTCTCCAACAGTTTATGCACGCCGCAGTCTGTCTTATCTCATGAACAATATGCCAGAAGAAGCACTTAATGATGCATTGCAGGCACAAATAATATCCCCTATCTGGTACATTGCATCCTATTTACAAGCTGTGGCTCTTCTTGCACTGGGCAGGGAGAGTGAGGCCCAAGTGGCACTTAAAGAGGGTTCTTCACTCGAAAGTAAAAGAAACATAAATTGA 1491 0.4326 MFSRRPWFGMGCEFSRFSACCSGIEQSGPVPEAHIDENEENSEAIDVPPFREYTIDQLRKATSGFAVENIVSEHGEKAPNVVYKGKLENQTRIAVKRFNRSAWPDARQFLEEARAVGQLRNQRLVNLLGCCSDGDERLLVAEYMPNDTLAKHLFHWDTQPMKWAMRLRVVLNLAQALEYCTSKGRALYHDLNAYRVLFDDEGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRNHQMLADSCLEGQFSNDEGTELVRLASRCLQSEPRERPNPKSLVTALIPLQKDSEVPSHVLMGIPHGATALPLSPLGEACLRMDLTAIHEVIEKIGYKDDEGAATELSFQMWTNQMQETLNSKKKGDSAFRHKDFKAAIDSYTQFIDVGTMVSPTVYARRSLSYLMNNMPEEALNDALQAQIISPIWYIASYLQAVALLALGRESEAQVALKEGSSLESKRNIN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0086 496 ProSiteProfiles Protein kinase domain profile. 68 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0086 496 SUPERFAMILY TPR-like 395 490 IPR011990 GO:0005515
Dere13g0086 496 FunFam probable serine/threonine-protein kinase At4g35230 389 496 - -
Dere13g0086 496 Gene3D Tetratricopeptide repeat domain 389 495 IPR011990 GO:0005515
Dere13g0086 496 Pfam Protein tyrosine and serine/threonine kinase 81 318 IPR001245 GO:0004672|GO:0006468
Dere13g0086 496 FunFam probable serine/threonine-protein kinase At4g35230 40 143 - -
Dere13g0086 496 Gene3D Phosphorylase Kinase; domain 1 38 143 - -
Dere13g0086 496 FunFam probable serine/threonine-protein kinase At5g41260 145 336 - -
Dere13g0086 496 SUPERFAMILY Protein kinase-like (PK-like) 40 329 IPR011009 -
Dere13g0086 496 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 32 494 IPR045845 GO:0004672|GO:0009742
Dere13g0086 496 Gene3D Transferase(Phosphotransferase) domain 1 145 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0086 Dere-ChrDere13 1980503 1988119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0086 38 319 Glycoside Hydrolase AT3G07070 34.839 1.73e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Dere13g0086 PK_Tyr_Ser-Thr 7.2e-28 CL0016