Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0079 ATGCATGCGTCATGCTTGACAACGAAGGAACCAGAAAGCGAGAAAGGGAAGAAGGGCAATAAAGCTGAGAGTGAAATTGAATTTTCCATGCGAGTCTTTCTTGTACACGCAACCTGCACTACCACTCACCGATTGACCATCTCATTGAAAACAAAGGATTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTCCTTCCAAGCTGTTCCTGAAATTCGGTTTCAATCTCACGCGACCGATCGCCGAATTTCTCAATCGCGAGCCGAAGATGATAGTAATTTTTGGGCACTGGAGATAGGGGAGATGGGCGGTTGCTGTTGCTGTTGCTGTTCTTCCAAAGAAACTGAATTGAGTGCTCCACCAGCATACTACTACTACCCAAGAGCATCAGAGGAGCATTTTCCCTTATCATCTCACCACGGTGCTGCCTCTGCTTTCCCTGGGGGGCTCTTAGTCGATACTAATCTAGATACTTCAAGTCCTGATACTTATAGACCGCCTCCTGCTCCTATCCCTTTCAATGTTACGTTAGGCACCACTCCAACACCACCTGTGGCTCAAGAAATTTGCAGCAACAAGACTAATGAATCCTTGCATTCTACAAATTCGAATTCCGTTCAAGAAACAGTTGCTGGCAACAATAATGGGGCCTTAGCTAAGTTGGAAGAGGTGAAGGAATCAGAGTGCAAAGTTCAGACTGATTTAGAACTTGACTCAGCCAAGGATTCAGAGATCGAGCTTCCACATTTGGCAGAACCTACTATTTTAGCAGAAGAGGAGGACACGTGCCCAATTTGTTTAGAAGAGTATGATGCAGAGAACCCAAAACTGACCACGAAATGTATCCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACCTGTCCTGTCTGTGATGAGGATGTGGTTTTCAACCCCCCACTTGATTAA 954 0.457 MHASCLTTKEPESEKGKKGNKAESEIEFSMRVFLVHATCTTTHRLTISLKTKDSSLLLLLLLLLFFFSFQAVPEIRFQSHATDRRISQSRAEDDSNFWALEIGEMGGCCCCCCSSKETELSAPPAYYYYPRASEEHFPLSSHHGAASAFPGGLLVDTNLDTSSPDTYRPPPAPIPFNVTLGTTPTPPVAQEICSNKTNESLHSTNSNSVQETVAGNNNGALAKLEEVKESECKVQTDLELDSAKDSEIELPHLAEPTILAEEEDTCPICLEEYDAENPKLTTKCIHHFHLACILEWMERSETCPVCDEDVVFNPPLD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0079 317 ProSiteProfiles Zinc finger RING-type profile. 266 307 IPR001841 -
Dere13g0079 317 Pfam Ring finger domain 264 306 IPR001841 -
Dere13g0079 317 MobiDBLite consensus disorder prediction 1 22 - -
Dere13g0079 317 SMART ring_2 266 306 IPR001841 -
Dere13g0079 317 MobiDBLite consensus disorder prediction 7 22 - -
Dere13g0079 317 FunFam Putative E3 ubiquitin-protein ligase RHB1A 243 311 - -
Dere13g0079 317 CDD RING-H2_AIRP1-like 262 310 - -
Dere13g0079 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 312 IPR013083 -
Dere13g0079 317 SUPERFAMILY RING/U-box 253 313 - -
Dere13g0079 317 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 148 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0079 Dere-ChrDere13 1878255 1881449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0079 105 317 C3H Transcription Factor Family AT5G41350 52.074 4.59e-68 210