Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0072 ATGTGTGAGGACAAATCGAGAGAGATGGTATCATCGTCGGCTGGATTCTGCTACTCGGAGATATCAACGGGTAACCCAGCGATTCAAACCCATCTGGGGAATCAGATCCAAGCCTTTGTGTCCGACCCGGACATGTTCAACCTCACCACGAGCATGGACATGATCGGCTTCTCCAAGAATCTTCACCAACAAAGCGACAGTAACGCCCTCGTGTGGAAAAGCTTCCTGGGCAAACCCACCCACCTTCCGGATCCTTCCTCTTCCAAGTCGACCATGAATGAGTCATCTTCCACTAATTTCTTTCATCACAATGAGTATACCAAACCAGACTTCACATCTAGCGACAATCTAATCGTGGGAGGAGCTCATCATCATGATTCTCCGTCTGCTGCCACTTGGCACGATAACAGATTAATTGTGGATGATTCTTCTCTAAGGTGTGTGTTCCCTTGTGAAGGAAACGAAAGGCCCAGTCAAGGCCTTTCCCTCTCCCTCAGTTCCAGCAATCCGTTAAGCATTGGATTACAATCTTTTGAACTAAGACAGACCAACCATCCTCAGCACCAACCAGATTTTGTTTCTTCAACTAGTGGAGACAAGCTGTTGTTGGGAAAATCGGTGATTCCTCATCAGCAAGATGGGAATCTGTATCAAGGACATTTTCTGCTCAAGAACTCCAAGTATTTGGAGGCTGCTCAGGAACTTCTCAACGAGTTTTGCAGTCTGGGAACAAAGCAAAGTGACATAGTGAAGCAAAAGTGGAGTCAAAAAAACAAGCAGTGGGAAGATGATAACGGAATCGGTCCCTCTAAGAAGCACCCCGTTGGATCTCTGGAATTTGTTGAACTACAGAAGAGAAAGACCAAACTGCTTTCCATGCTGGAAGAGGTTGACCGGAGATACAGGCACTACTGCAATCAAATGAAGGCGGTGGTGTCATCGTTTGAAGCAGTGGCAGGGAATGGAGCGGCGAGGGTGTACTCGGCGTTGGCATTGAAGGCGATGTCAAGGCATTTCAGGTGTTTGAAGGATGGGATAGTGAGTCAGATAGAGGTGACGAGGAAAGGGATGGGAGAGAAAGACCCAGTTGCACCTGGCACCACCAAGGGGGAAACCCCAAGGCTCAGAATCATAGACCAAACACTCAGACAACAGAGGGCCTTCCAGCAAATGAGCATGATGGAGAGCCATCCATGGAGACCCCAGCGTGGCCTTCCCGAGCGATCCGTATCAGTTCTTCGAGCTTGGCTTTTCGAGCATTTTCTCCATCCGTACCCAAGCGATATGGATAAACATATCTTAGCCCGCCAAACCGGTCTCTCAAGAAGTCAGGTATCAAACTGGTTTATTAATGCGAGGGTGAGGCTATGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAATTGAAGGAGCCAGAGAACAACATGGCTTCTTCTGAGGGCGTCACCGATCCCATTGACGACAACACCGGCGGCCGGAAAGTTGAGAATCCACCTCCAACGCGTCTCGAAGATCAGAAGCCAATCCAAGACCACCGATTGCTTCGAATAGACTCCGAGTGTGTTTCTTCCATCATAAATAACCCCCTGGAACATAAAAACGACTCCAAGAACCAGAGCCACCAAGATCAACAATGTACATTTGGGTCCGTAGAGCTTGATTTTTCTTCCTACAACACCCACCACTCAGCAGGCGTGGTTTCTTACTCTAATGAGAATGGGAATAATCAGAATTATAACAGTGGAGGTGTGTCATTGACGCTAGGGTTACAGCAACATGGTGGGAGTGGAGTGAGTTTGGCGTTCCCCCCACCAACTCAGGCTTCTCTATTCTACCCAAGGGACCAAATGGAAGACTGTCAACCTGTTCAGTACTCGCTTTTGGATGGAGAACCACAAAATCTTCCCTACAGAAATTTAATGGGTGCACAGTTGCTCCATGACTTGGCAGGATAG 1956 0.4816 MCEDKSREMVSSSAGFCYSEISTGNPAIQTHLGNQIQAFVSDPDMFNLTTSMDMIGFSKNLHQQSDSNALVWKSFLGKPTHLPDPSSSKSTMNESSSTNFFHHNEYTKPDFTSSDNLIVGGAHHHDSPSAATWHDNRLIVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPLSIGLQSFELRQTNHPQHQPDFVSSTSGDKLLLGKSVIPHQQDGNLYQGHFLLKNSKYLEAAQELLNEFCSLGTKQSDIVKQKWSQKNKQWEDDNGIGPSKKHPVGSLEFVELQKRKTKLLSMLEEVDRRYRHYCNQMKAVVSSFEAVAGNGAARVYSALALKAMSRHFRCLKDGIVSQIEVTRKGMGEKDPVAPGTTKGETPRLRIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDMDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYMEELKEPENNMASSEGVTDPIDDNTGGRKVENPPPTRLEDQKPIQDHRLLRIDSECVSSIINNPLEHKNDSKNQSHQDQQCTFGSVELDFSSYNTHHSAGVVSYSNENGNNQNYNSGGVSLTLGLQQHGGSGVSLAFPPPTQASLFYPRDQMEDCQPVQYSLLDGEPQNLPYRNLMGAQLLHDLAG 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0072 651 SMART HOX_1 399 463 IPR001356 GO:0003677
Dere13g0072 651 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 487 - -
Dere13g0072 651 MobiDBLite consensus disorder prediction 471 507 - -
Dere13g0072 651 CDD homeodomain 399 460 IPR001356 GO:0003677
Dere13g0072 651 FunFam BEL1-like homeodomain protein 4 402 464 - -
Dere13g0072 651 Gene3D - 402 464 - -
Dere13g0072 651 SMART prehox3 217 348 IPR006563 -
Dere13g0072 651 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Dere13g0072 651 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Dere13g0072 651 Pfam Associated with HOX 223 346 IPR006563 -
Dere13g0072 651 SUPERFAMILY Homeodomain-like 400 466 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0072 Dere-ChrDere13 1823219 1826078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0072 136 650 Homeobox Transcription Factor Family AT5G41410 47.872 3.56e-139 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere13g0072 POX 7.8e-47 No_clan