Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0068 ATGGGTGGCTACGTGAAGCTCGGCCATGTAATGAAGGTTAAAAGAGGGCTTTGGTCTCCCGAGGAAGATGAGAAACTCATTCGATACATTTCCACTCATGGCTATGGCTGTTGGAGTGAAGTTCCAGAGAAAGCTGGTCTCCAAAGGTGTGGCAAGAGCTGTAGGCTGAGATGGATTAATTACTTGAGGCCTGATATTAGAAGAGGCAGGTTTACTCCTGAGGAGGAGAAGCTAATTATAAGCCTTCATGGGGTCGTAGGCAACAGATGGGCTCACATAGCAAGTCACTTGCCTGGCAGAACTGACAACGAAATAAAGAATTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGCCTTTGGTGGCTACAACTACCGCTGCACAAAGTATGGATCATCCCCAATTCAATTATAATCCCAATCAACTAGACTTTGCCAACCAAGATCATAATCTAATTACGACAAAGCCACCACTTCAAGAAACCTTCTTTTCTTCCACGTGCCCCTTATTTATGTTTGACACAAGTTCACTGGATCATGGGACAACCGCAGACAACAACAGTATTGTAGGATCAACAGATGTGTTCCAAGATGGTGTGAGTTTGATGGGCTCGGAAACTTGGAACTTGAGCCACCATCAATTGCAAGCCCAAGGGCTTCCTCCAACTTCTGCAACAACTTTCACAGGCATTGACACTACAAGTACAAGTACAAATTATAACTTGCCACCATTGATAGACAGCTTGGTGCCCATACAAGTGGAGTCTTGTAGTGTGGAGGACGAAGGAGAAATGGCTCTGGAGTGCTTGCGGAGGCAAGAGTTAAATATTGATTGGGTAGAGACAGGTCAGCAACAATGTCCGAACTTCTTATTCTGGGACAACCTCGGTGGGGATGAAATAACAGCACCAAGTTCATCAAATACAGTACTTTCTTCTTTTCCTTCGTCCTTGTGA 957 0.441 MGGYVKLGHVMKVKRGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPLVATTTAAQSMDHPQFNYNPNQLDFANQDHNLITTKPPLQETFFSSTCPLFMFDTSSLDHGTTADNNSIVGSTDVFQDGVSLMGSETWNLSHHQLQAQGLPPTSATTFTGIDTTSTSTNYNLPPLIDSLVPIQVESCSVEDEGEMALECLRRQELNIDWVETGQQQCPNFLFWDNLGGDEITAPSSSNTVLSSFPSSL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0068 318 PANTHER MYB DOMAIN PROTEIN 55 11 244 - -
Dere13g0068 318 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Dere13g0068 318 CDD SANT 18 62 IPR001005 -
Dere13g0068 318 SMART sant 14 64 IPR001005 -
Dere13g0068 318 SMART sant 67 115 IPR001005 -
Dere13g0068 318 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dere13g0068 318 FunFam Transcription factor MYB26 69 138 - -
Dere13g0068 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere13g0068 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 62 IPR017930 -
Dere13g0068 318 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere13g0068 318 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dere13g0068 318 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Dere13g0068 318 Gene3D - 15 67 - -
Dere13g0068 318 CDD SANT 70 113 IPR001005 -
Dere13g0068 318 Gene3D - 70 137 - -
Dere13g0068 318 FunFam MYB transcription factor 9 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0068 Dere-ChrDere13 1764637 1766739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0068 3 296 MYB Transcription Factor Family AT1G63910 50.872 1.23e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g0068 Myb_DNA-binding 2.1e-15 CL0123