Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0058 ATGGAACAGAAAAGCTTGTTGATATCGGCGTTGAGTGTTGGCGTGGGAGTGGGAGTGGGGATTGGGTTGGCTTCCGGACAAACCGTCGGCAAATGGGGAGCTAACACTTGTTCCTCTAACGCCGTCACTGTCGACAAGATAGAGCAGGAAATGCTTCGATTGGTTGTTGATGGAAGAGAAACCAACGTCACCTTCGATCAGTTCCCTTATTACCTCAGTGAGCAGACACGCGTGTTGCTGACAAGTGCTGCTTATGTCCATTTAAAGCATGCTGAGGTCTCTAAATTTACACGTAATCTTTCTCCTGCAAGCCGGACTATTCTGCTCTCAGGGCCTGCAGAACTTTACCAACAGGTGCTTGCCAAGGCTTTAGCCCATTACTTTGAAGCGAAGCTGCTTCTGTTAGATTTAACTGACTTTTCATTGAAGGTGAGTGTGAGCAGTTTTGGTGTCATTTTATTCTTTCTCCTTTTGCTCATGTGCATAATGGTTGGTTCGTCTTCTGCACAGATTCAGAGTAGATATGGTGCTGCCAACAAAGAATCTAATTTCAAAAGGTCCACTTCAGAATCAACTTTGGAGAGACTATCTGGCTTATTTGGGTCATTTTCAGTCTTTTCACAGAGGGAGGAACCTAAAGGAAAAATGCTCAGACAAAGCAGTGGAGTGGACCTCCGATCAATGGGTGCTGCTGGATCTAGCGATCCTCCTAAGCTTCGTAGGAATGCTTCTGCCTCTGCAAATATCAGTAGCCTTGCTTTACAAAGCGCTCCTACTAATCCAGCTCCTCTTAAGCGCACAACCAGTTGGTCCTTTGATGAAAAGCTTCTTATACAGTCTCTTTACAAGGTTCTGGTTTATGTGTCCAAAACCTATCCCATTGTGCTGTATCTGCGGGATGTTGATAAGCTGTTACATAGATCACAAAGAATTTATAAGTTGTTCCAGAAAATGTTGGAGAAACTATCTGGACCAGTCTTGATTCTTGGTTCTCAAGTTCTGGATTCTGGTGATAAGTACAGAGAGGTGGATGAGACACTTGCTTCAGTGTTCCCATACAACATAGACATTAGACCTCCAGAAGATGAATCACATCTTGTGAGCTGGAAGTCTCAACTGGAAAAGGATATGAAGAAGATACAGGTTCAGGATAACAAAAATCATATTTTGGAAGTACTTGCAGCCAATGATCTTGATTGTGATGATCTGGATTCCATCTGTGAGGCAGACACAATGTTTCTCAGTAATTATATAGAAGAGATTGTTGTATCAGCAATTTCTTATCATTTAATGAAAAACAAAGACCTAGGGTACAGAAATGGGAAACTTGTTATTTCGCGTAATAGTTTATCCCAAGCGTTGGGTATATTCCAGGAGGGGAAATCTGATGGAAGAGATACATTAAAATTGGAAGCTCAAGCTTTGAAATCTGAGGAAAGAGAGGAAGGAACTGCTGTGAAGCCTGAAGCGAAGTCTGAAAATGCAGCTCCTGAAAAAAAAGCTGAGGGAGAAATATCAACGTCGGTGGCAAAGCCAGAGAATGAAAAATCGGTTCCTCTGGAATCCAAAGTTGCTGAAGTTCCTCCGGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAATGAGATTAATGTGACATTCACTGATATTGGTGCCTTAGACGAGATCAAAGAATCCCTTCAAGAACTAGTGATGCTTCCGCTTCGAAGGCCTGACCTTTTCACTGGAGGCCTTCTGAAGCCTTGTAGAGGAATATTGCTTTTTGGGCCTCCTGGCACTGGGAAGACAATGCTGGCTAAGGCCATTGCAAAGGAGGCTGGAGCAAGTTTCATCAATGTGTCCATGTCGACCATCACTTCGAAATGGTTTGGTGAAGATGAAAAGAATGTTCGAGCTTTATTTACACTGGCAGCCAAGGTCTCCCCAACAATTATATTTGTCGATGAGGTTGACAGCATGCTTGGGCAGCGGACAAGAGTTGGAGAGCATGAAGCCATGCGAAAAATAAAGAATGAATTCATGACCCATTGGGACGGGCTTATGACAAAACCAGGGGAGCGCATCCTTGTTCTTGCTGCAACCAATAGGCCTTTTGATCTGGATGAAGCAATTGTTAGGCGATTTGAAAGGAGAATTATGGTAGGGCTGCCATCCGTGGAGAACAGGGAAAAGATTTTGAGGACTCTTTTGGCAAAAGAGAAGGTGGACGATCAAGTTGACTTTAAGGAGCTAGCAACTATGACCGAAGGATATACTGGAAGTGATCTAAAGAACCTTTGCACAACTGCTGCCTATCGGCCTGTCAGAGAATTAATTCAGCAAGAGAGAATGAAGACTCTGGATAAAAAGCAGAAAGCTGCCGAAGGAGGTGAGAAAGATTTGCAAGATAGACAGGGAGAACAATCTACAGCAGAAAATGCCCCAGATGCTGTTGATGCACAAGAGGAAGTTAAACAGGAAAGAGTTATTACCCTTAGGCCATTGAACATGCAGGACATCAGAGAGGCGAAGAATCAAGTTGGCCCAAGCTTTGCAGCCGAGGGAGCAGGAATGAATGAGTTGAAGCAGTGGAACGACTTATATGGGGAAGGTGGTTTAAGGAAGAAACAGCAATTGTCTTACTTCCTTTGA 2643 0.4362 MEQKSLLISALSVGVGVGVGIGLASGQTVGKWGANTCSSNAVTVDKIEQEMLRLVVDGRETNVTFDQFPYYLSEQTRVLLTSAAYVHLKHAEVSKFTRNLSPASRTILLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKVSVSSFGVILFFLLLLMCIMVGSSSAQIQSRYGAANKESNFKRSTSESTLERLSGLFGSFSVFSQREEPKGKMLRQSSGVDLRSMGAAGSSDPPKLRRNASASANISSLALQSAPTNPAPLKRTTSWSFDEKLLIQSLYKVLVYVSKTYPIVLYLRDVDKLLHRSQRIYKLFQKMLEKLSGPVLILGSQVLDSGDKYREVDETLASVFPYNIDIRPPEDESHLVSWKSQLEKDMKKIQVQDNKNHILEVLAANDLDCDDLDSICEADTMFLSNYIEEIVVSAISYHLMKNKDLGYRNGKLVISRNSLSQALGIFQEGKSDGRDTLKLEAQALKSEEREEGTAVKPEAKSENAAPEKKAEGEISTSVAKPENEKSVPLESKVAEVPPDNEFEKRIRPEVIPANEINVTFTDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMTKPGERILVLAATNRPFDLDEAIVRRFERRIMVGLPSVENREKILRTLLAKEKVDDQVDFKELATMTEGYTGSDLKNLCTTAAYRPVRELIQQERMKTLDKKQKAAEGGEKDLQDRQGEQSTAENAPDAVDAQEEVKQERVITLRPLNMQDIREAKNQVGPSFAAEGAGMNELKQWNDLYGEGGLRKKQQLSYFL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0058 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 788 IPR027417 -
Dere13g0058 880 Pfam AAA+ lid domain 743 785 IPR041569 -
Dere13g0058 880 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 46 879 - -
Dere13g0058 880 MobiDBLite consensus disorder prediction 783 803 - -
Dere13g0058 880 Pfam ATPase family associated with various cellular activities (AAA) 589 719 IPR003959 GO:0005524|GO:0016887
Dere13g0058 880 MobiDBLite consensus disorder prediction 783 822 - -
Dere13g0058 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 410 IPR027417 -
Dere13g0058 880 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 548 723 - -
Dere13g0058 880 MobiDBLite consensus disorder prediction 476 521 - -
Dere13g0058 880 Gene3D - 721 797 - -
Dere13g0058 880 SMART AAA_5 585 722 IPR003593 GO:0016887
Dere13g0058 880 Gene3D - 548 720 IPR027417 -
Dere13g0058 880 MobiDBLite consensus disorder prediction 476 506 - -
Dere13g0058 880 ProSitePatterns AAA-protein family signature. 692 711 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0058 Dere-ChrDere13 1669870 1676180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0058 549 781 Calmodulin-binding Proteins AT3G56690 38.559 2.20e-43 168