Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0047 ATGAAAATTGTACGCATTTTCTTTTCCATTTACATATTAGGTTTGATTTTCCGGCTAGGAAATGCGGAACCGGTTGAAGATAAGCGAGCATTGCTGGACTTTGGGCGTAGTTTTCCTCCCTCTCGCCCTCTGAATTGGAATGAAAGTTCTTCAGTGTGTAGTGGTTGGACTGGAGTGACTTGTAACCAAGATAAGTCCCGAGTAATAGCCGTCCGCTTGCCCGGAGTCGGATTCATTGGCGAGATTCCGCCCAATACAATCACTCGCCTCTCAGCGCTGCAAGTTTTAAGTCTCAGATCCAATGTTATTAGCGGCCATTTTCCTTCTGATTTTTCTAATCTCAAAAACTTAACTTTGCTTTATCTCCAGTTTAACAATTTGTCGGGTCCTTTGCCAGATTTCTCTGTTTGGAAGAATCTTACCGTTGTCAATTTGTGTAATAATCATTTCAATGGCAACATTCCTTTCTCGCTTTCGAATTTGACTATGCTTGCTGGTTTGAATCTTGCAAACAACGCGCTTTCTGGTGAAATTCCTGATCTTCAGTTGCCCAGATTGCAAATGCTGAATCTGTCTAACAACAATTTGCACGGTCTTGTGCCTAAATCCTTCCAGAGGTTTCCTGAATCAGCATTCGTCGGAAATAACATTTCTCTTGAAATTTCTCATGACCTTTCTCCTGTACTTCCTCCCTCTTCCGAGCCATCTTCAAAATCGCAGAAACATGGAAGACTGAATGAAGCAGCACTTCTGGGAATAATAGTCGGTGGTGTTGTGGGCCTCTTAACTTCTGGTTGTTTACTACTTGTTTGCTGCTCAAGAAGGAGGCATGGAGATGGCTTTTCTGGGGAATTGCACAAGGGAAGGATGTCTCCAGAGAAAGAAGTTTCAAGGGATCAAGATGCAAATAATAAGCTGGTTTTCTTTGAGGGATGCAGTTATGCTTTTGACTTAGAAGACTTATTGAGGGCTTCTGCTGAGGTACTGGGCAAGGGAACGTTTGGTGCTGCATATAAGGCCACACTGGAGGATGCAACCACAGTTGTGGTGAAGAGGTTAAAGGAAGTAGCCGTTGGAAGGAAGGATTTTGAGCAACACATGGAGATTGCGGGAAGTCTTAAACATGAAAATGTGGTTGAGCTCAAGGCATATTACTATTCCAAAGATGAAAAACTGATGGTATATGATTACTACAGTCAGGGGAGCATCTCCTCCATGTTGCATGGTAAAAGAGGAGAGGATAGGGTGCCTTTAGATTGGGATACTCGGCTTAGAATTGCTATAGGTGCTGCTAGAGGCATTGCTCATATCCATGCGGAGAATGGTGGGAAACTTGTACACGGCAACATCAAATCGTCAAATATCTTCCTCAACTCGAGGCAGGATGGTTGTGTTTCTGATCTTGGCCTGGCAACCATAATGAGCTCAATTGCCCTACCCATCTCACGTGCTGCTGGTTACCGAGCACCTGAAGTTACGGACACCAGGAAAGCAATGCAGCCTTCAGATGTTTATAGCTTTGGTGTGGTGTTACTGGAGCTTCTGACTGGGAAATCCCCTATCCACACTACAGGTGGTGATGAGATTGTCCACCTGGTGAGGTGGGTTCATTCAGTTGTGCGAGAGGAGTGGACAGCTGAAGTGTTTGACTTGGAGCTGATGAGGTATCCAAATATAGAGGAAGAGATGGTGGAAATGCTACAGATAGCAATGTCATGCGTGGTAAGGATGCCTGATCAGAGACCAAAGATGTCAGAAGTTGTAAAGATGATAGAAAATGTCAGGCAGATTGATACAGAGAATCGGCCATCATCTGAGAATCCAGCTGAAGCCGCAGCACCATCGTCAGTGTTAAGGGAAGAATGA 1866 0.4443 MKIVRIFFSIYILGLIFRLGNAEPVEDKRALLDFGRSFPPSRPLNWNESSSVCSGWTGVTCNQDKSRVIAVRLPGVGFIGEIPPNTITRLSALQVLSLRSNVISGHFPSDFSNLKNLTLLYLQFNNLSGPLPDFSVWKNLTVVNLCNNHFNGNIPFSLSNLTMLAGLNLANNALSGEIPDLQLPRLQMLNLSNNNLHGLVPKSFQRFPESAFVGNNISLEISHDLSPVLPPSSEPSSKSQKHGRLNEAALLGIIVGGVVGLLTSGCLLLVCCSRRRHGDGFSGELHKGRMSPEKEVSRDQDANNKLVFFEGCSYAFDLEDLLRASAEVLGKGTFGAAYKATLEDATTVVVKRLKEVAVGRKDFEQHMEIAGSLKHENVVELKAYYYSKDEKLMVYDYYSQGSISSMLHGKRGEDRVPLDWDTRLRIAIGAARGIAHIHAENGGKLVHGNIKSSNIFLNSRQDGCVSDLGLATIMSSIALPISRAAGYRAPEVTDTRKAMQPSDVYSFGVVLLELLTGKSPIHTTGGDEIVHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDTENRPSSENPAEAAAPSSVLREE 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0047 621 PANTHER OS05G0588300 PROTEIN 7 605 - -
Dere13g0047 621 MobiDBLite consensus disorder prediction 597 621 - -
Dere13g0047 621 SUPERFAMILY Protein kinase-like (PK-like) 327 591 IPR011009 -
Dere13g0047 621 SUPERFAMILY L domain-like 37 207 - -
Dere13g0047 621 FunFam pollen receptor-like kinase 1 292 397 - -
Dere13g0047 621 Gene3D Ribonuclease Inhibitor 137 224 IPR032675 -
Dere13g0047 621 ProSiteProfiles Leucine-rich repeat profile. 185 206 IPR001611 GO:0005515
Dere13g0047 621 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Dere13g0047 621 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Dere13g0047 621 Gene3D Phosphorylase Kinase; domain 1 282 397 - -
Dere13g0047 621 Pfam Leucine rich repeat 79 127 IPR001611 GO:0005515
Dere13g0047 621 Gene3D Transferase(Phosphotransferase) domain 1 399 613 - -
Dere13g0047 621 ProSiteProfiles Protein kinase domain profile. 323 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0047 621 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Dere13g0047 621 SMART LRR_typ_2 90 113 IPR003591 -
Dere13g0047 621 SMART LRR_typ_2 114 138 IPR003591 -
Dere13g0047 621 SMART LRR_typ_2 183 206 IPR003591 -
Dere13g0047 621 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 398 605 - -
Dere13g0047 621 Pfam Protein kinase domain 326 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g0047 621 MobiDBLite consensus disorder prediction 597 611 - -
Dere13g0047 621 FunFam Probable inactive receptor kinase RLK902 24 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0047 Dere-ChrDere13 1593251 1596810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0047 20 617 Receptor kinase-like Gene Family AT4G23740 65.865 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere13g0047 Pkinase 8.9e-35 CL0016