Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0036 ATGAAGAGAGCTGTGAACAGAACATACTCATGGGTGATGCAGATAGCAAGAACATTGAATGACAACTGGAGGACAACACCATCTTCACCTGACACAAGGGGCTTTCTGGTGCAGAGGATATTATCTTCTTACGAGAAGGCACCACTAATTCTAAGATGGAAATGCGGAAAATTCCAAGGCACAGGCAACAGAGTCTCCAATATCAATCAACAGAAATCCTCGAGGGAGGATGTTAATGAGGCCCTCAAAAATCATCGTGAGCTTCAACATAAGTCAAAGAAGAGAACGATGGATCAAGTTAGAGTGATCTCTGAGATTGGCCTTAAAGGATCCCCAGATGATGGCTACAGCTGGAGGAAGTATGGGCAGAAAGACATCCTCGATGCACCTTCCGCCGAACTCAGAGCTGTTGAGCCACGAAGCAAGTACAAAGATCAGATGAGGCCCCAGATAACCTGGGAAACATTGAGGGGCATGTCCTTTTACTTTCCCTCCAACTGCTTTGCATGCATAACACAAGAATATCACAGCTTGCCCCCTTTGGCAGTACTGCAGTTGAGGAGGATTCCTTCTGGGGCAGTCTTTCTCGAACACCAATACTATCCCAAACAAGTCAGATACAAACTATTTCCCATGTCCATCTTTCCAGATAAACGAGTTCAAAGGGCTCAAGAACCAGCCATGTTCAGACCCTGA 696 0.4583 MKRAVNRTYSWVMQIARTLNDNWRTTPSSPDTRGFLVQRILSSYEKAPLILRWKCGKFQGTGNRVSNINQQKSSREDVNEALKNHRELQHKSKKRTMDQVRVISEIGLKGSPDDGYSWRKYGQKDILDAPSAELRAVEPRSKYKDQMRPQITWETLRGMSFYFPSNCFACITQEYHSLPPLAVLQLRRIPSGAVFLEHQYYPKQVRYKLFPMSIFPDKRVQRAQEPAMFRP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0036 231 Coils Coil 68 88 - -
Dere13g0036 231 Gene3D WRKY domain 90 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere13g0036 231 Pfam WRKY DNA -binding domain 113 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere13g0036 231 SMART WRKY_cls 112 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere13g0036 231 SUPERFAMILY WRKY DNA-binding domain 111 130 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0036 Dere-ChrDere13 1508047 1509143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0036 26 129 WRKY Transcription Factor Family AT5G24110 36.111 3.72e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere13g0036 WRKY 2.4e-05 CL0274