Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0012 ATGGGCCCGGAAAGTTCAACCACACTTGAGCAGCGTCTCCAGTTCATATTGCAGAGCCGTACGGAGTGGTGGGTGTACAGCATCTTCTGGAAAGCTTCCAAAGGTGAGGAGGGTGATACGAGTCGTAGGCGTGAATTGTTAAATTGGGGCGATGGCCACTTCCGTGGCGCGAGAGAGTCCATTCCCAGGGAAGGCGCTGGGGGGCACTTGAGAGAGTTAGAATGGTTTTACAGGGTATCCATGACCCGGTCATTTGCGAGAGGGGATGATGTGGTTGGGCGTGCCTTCGCCTCTGCCACTCCTGTTTGGTTGGCCGGAGAGCACCAGATGCAATTCCACCACTGCCACAGAGTTCGAGAAGCTGCTGCTCACGGCATCCAGACTCTGGTGTGCATTCCCATTCTCACTGGGGTGATTGAGCTGGCCTCCTCTGATTTGATCACCCAAGATTTGTGCCTTCTCCAGTTGGTTAAATCAGTTCTTCAGTTTGACTTTGACATTATCACCACCACCCCACCAATTCTCCTCTCTCAACCTCCTCAACATGAGCCCCTCGGCGCCAGTGGATCTTCCACTGACTCCGCACCTTCCGACTCTGACGCTCCTCTTCCCTCTCCCTCTCCCTCTGCCCCTGGCCCCACCCATGCCCTCAAGCCTCGACCCCTCAGAAGAAAACCCAGAAATCATCCCCTCAAACCTCAACACCTATTGCCTCTAAACCACGTGGAGGCCGAGCGGCAGCGTCGAGAGAGACTCAATCAAAGATTCTATGCTCTCCGTTCTGCCGTCCCTAACGTCTCCAAAATGGACAAAGCCTCTCTCCTCTCGGACGCCGTCACCTACATCAATCAACTTAAGGCCCAAGTTGATGAGCTAGAGGCCAGATTCAAGATGCTTTCCAAGAAATCGAAACAAGAAGAAGCTGCCACTATGCAATCCTCAAGTTCTGGAACGACTGCGCTTGGAGTTGAGGTGAATATCGTGGGATCGGAGGCAATGATAAGGGTTCAGTGCCTCGATGTGAATCACCCGGCTGCAAGGTTGATGGATGCTCTCAGACAACTCGATTTTCATATTCACCATGCCAGCGTATCAAGAGTCAAAGACCTAATGCTGCAAGACATTGTCGTTAGGGTTCCTCATAACTTCAAGACTGCTCAGGCCATGAAAAATGCCATTCTACAAACGTTACAGAACTAG 1200 0.5217 MGPESSTTLEQRLQFILQSRTEWWVYSIFWKASKGEEGDTSRRRELLNWGDGHFRGARESIPREGAGGHLRELEWFYRVSMTRSFARGDDVVGRAFASATPVWLAGEHQMQFHHCHRVREAAAHGIQTLVCIPILTGVIELASSDLITQDLCLLQLVKSVLQFDFDIITTTPPILLSQPPQHEPLGASGSSTDSAPSDSDAPLPSPSPSAPGPTHALKPRPLRRKPRNHPLKPQHLLPLNHVEAERQRRERLNQRFYALRSAVPNVSKMDKASLLSDAVTYINQLKAQVDELEARFKMLSKKSKQEEAATMQSSSSGTTALGVEVNIVGSEAMIRVQCLDVNHPAARLMDALRQLDFHIHHASVSRVKDLMLQDIVVRVPHNFKTAQAMKNAILQTLQN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0012 399 MobiDBLite consensus disorder prediction 183 200 - -
Dere13g0012 399 Coils Coil 275 309 - -
Dere13g0012 399 Gene3D - 237 303 IPR036638 GO:0046983
Dere13g0012 399 Pfam Helix-loop-helix DNA-binding domain 240 286 IPR011598 GO:0046983
Dere13g0012 399 PANTHER MYC 5 396 IPR045084 GO:0003700|GO:0006355
Dere13g0012 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 239 303 IPR036638 GO:0046983
Dere13g0012 399 MobiDBLite consensus disorder prediction 176 234 - -
Dere13g0012 399 MobiDBLite consensus disorder prediction 201 215 - -
Dere13g0012 399 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 160 IPR025610 -
Dere13g0012 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
Dere13g0012 399 SMART finulus 242 291 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0012 Dere-ChrDere13 1248851 1250050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0012 9 397 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.834 5.68e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g0012 bHLH-MYC_N 1.2e-35 CL0161