Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere12g1831 | ATGCAATTAGTATCAAATGGTAACAAGGAAGAATGTTCAGAGAGTGAACCCATCTTGAATCAGCATCACAATTTTGAGGGAACTGGAGAACCTTCATTTTCATGTGAAATTACAGACGCTGGAGGGGATTTGACTGTTGACAACGATGATTTACAGAACATTCAAGTTGATGAGACATGTCATTTGGTGAATGCAGATCATCCACAATGCCGGATATGCCTTGATAGTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGTACCCAAAAGTATGTCCACAGATCATGTCTTGATAATTGGAGGTCTACTAAGGAGGGCTTTGCCTTTTCACACTGTACAGAATGCAGAGCTGTCTTCATATTACGTGCTAATGTGCCACATGACCGGTGGTGGTTGAGATTAAAATTCCAGTTCCTTGTTGCCAGGGATCATGCATTTATTTTTATAACTGTTCAGCTGGTTGTTGCCTTCTTGGGGGTACTTGTGTACAAATTTTATGGAGACGAATTGCGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTCTATACTATGGCTGTTCTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCCATTATATGTGGCCAAAGAATCAATGAACGCCATTACCATGTTCTTGCTAAACAGGAATTGACAAAGGAATACGTGGTAGAAGATCGAGAACATATAAAGAATGTACCTGAACTTGATCCAAGTCATGTGACAGAACTGAGAATGTTGGGCCTTTACTAG | 774 | 0.4018 | MQLVSNGNKEECSESEPILNQHHNFEGTGEPSFSCEITDAGGDLTVDNDDLQNIQVDETCHLVNADHPQCRICLDSGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPHDRWWLRLKFQFLVARDHAFIFITVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHIKNVPELDPSHVTELRMLGLY | 257 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere12g1831 | 257 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 190 | 257 | - | - | |
| Dere12g1831 | 257 | SMART | ringv_2 | 69 | 118 | IPR011016 | GO:0008270 | |
| Dere12g1831 | 257 | CDD | RING_CH-C4HC3_MARCH | 70 | 118 | - | - | |
| Dere12g1831 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 122 | IPR013083 | - | |
| Dere12g1831 | 257 | Pfam | RING-variant domain | 70 | 117 | IPR011016 | GO:0008270 | |
| Dere12g1831 | 257 | SUPERFAMILY | RING/U-box | 65 | 121 | - | - | |
| Dere12g1831 | 257 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 62 | 124 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere12g1831 | Dere-ChrDere12 | 30979913 | 30983386 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere12g1831 | 30 | 216 | C3H Transcription Factor Family | AT1G50440 | 67.539 | 8.99e-88 | 258 |