Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1824 ATGGTTCTTCCATTTCCAAAGGTGTTTCCTGGCTCTTTTTGTATTATGGATGGTATTCATGGGAGTGATTCTCGGATACACATGAGTGATGCTCAACATCCTATGCATGTGCCATATGTGCCAGAACATGAACAACATGGTGGATTGGACCATATGAGTGATGGGAATGCTATGGAAGAGGATAATAATAATTGTTGTGATACTAATGTTGGCGGACATGAGAGTGTAGAAGGAGAGGTATCCAACCCTGGAAATCTTACTGACAATAACACTGCAATAATGGAGCAAGGGAGTGATGGTGGGGACCAGCTCACATTGTCTTTTCAAGGCCAGGTTTATGTGTTCGACTCTGTGTCGCCTGAAAAGGTTCAAGCTGTGCTATTACTACTAGGAGGCCGTGAAGTACCTTCCATGCCTGCAATTCCAATAGCTACTCACCATAATAATCGGGGAATTTCTGGGACTCCACTAAAACTCAGTGTCCCTCAGAGATTAGCCTCACTGATTAGGTTTCGTGAAAAGCGGAAAGAACGGAATTTTGATAAAAAAATCCGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACATCTTCTAAGTCCAATCCTGATGAATCTGCACCAGCTGCAACAAAGTGGGGGACAAATGAAAACTGGACATCAGACAACACTGGATCCCAACAGCAGGATATTGTCTGTAGGCACTGTGGCATCAGCGAAAAGTGCACGCCAATGATGCGACGTGGACCTGAAGGGCCAAGAACTTTGTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGGGACCTAACAAAGACCCCCTTACCTGGACACAATTCTTCATTAAACAGGAATGAGGGAGTGCTTGCCTTCAGATGTAAATTGGGTCATGGAGTAGAAAACTCAAGTGTCAAGGGATACGGATAG 957 0.4378 MVLPFPKVFPGSFCIMDGIHGSDSRIHMSDAQHPMHVPYVPEHEQHGGLDHMSDGNAMEEDNNNCCDTNVGGHESVEGEVSNPGNLTDNNTAIMEQGSDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMPAIPIATHHNNRGISGTPLKLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESAPAATKWGTNENWTSDNTGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLPGHNSSLNRNEGVLAFRCKLGHGVENSSVKGYG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1824 318 Pfam CCT motif 164 206 IPR010402 GO:0005515
Dere12g1824 318 SMART tify_2 97 132 IPR010399 -
Dere12g1824 318 MobiDBLite consensus disorder prediction 200 233 - -
Dere12g1824 318 Pfam tify domain 102 131 IPR010399 -
Dere12g1824 318 ProSiteProfiles Tify domain profile. 97 132 IPR010399 -
Dere12g1824 318 Gene3D - 230 292 IPR013088 GO:0006355|GO:0008270
Dere12g1824 318 SMART GATA_3 234 287 IPR000679 GO:0006355|GO:0043565
Dere12g1824 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 284 - -
Dere12g1824 318 CDD ZnF_GATA 239 282 IPR000679 GO:0006355|GO:0043565
Dere12g1824 318 ProSitePatterns GATA-type zinc finger domain. 240 267 IPR000679 GO:0006355|GO:0043565
Dere12g1824 318 ProSiteProfiles CCT domain profile. 164 206 IPR010402 GO:0005515
Dere12g1824 318 ProSiteProfiles GATA-type zinc finger domain profile. 234 282 IPR000679 GO:0006355|GO:0043565
Dere12g1824 318 PANTHER GATA TRANSCRIPTION FACTOR 28 42 284 IPR045280 GO:0006355
Dere12g1824 318 Pfam GATA zinc finger 240 276 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1824 Dere-ChrDere12 30913140 30917867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1824 16 296 Tify Gene Family AT1G51600 61.672 4.22e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere12g1824 CCT 9.3e-15 CL0281