Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1821 ATGGAGGGCGATTTTCGTGTGGATGACCTGTTTCTAAGTATAATCCAGGTCATGCAGGTGGCAACCATGGACTCCTCCATCTCTCGTAGTTCCAACTCCTCCACCAATGGCCTCCTCTCCGTCAATATCCCCAGCCATCACGATGACCCCCTCCCTCCCCAAATCAACGGCGACGGAGACGACGACGACGTTATCGATCCCGACGATCCTTTCGACGTCGCGCGCACCAAGAATGCACCACATGAGACCCTCAAGCGATGGAGACAAGCAGCTCTAGTGCTCAACGCTTCCCGGCGTTTTAGATATACTCTGGACTTAAAAAAAGGAGAGGAGGATGAGCATAAGAAAGGCTTGATTAGGGCCCATGCCCAAGTCATACGAGCAGCACTGCTTTTCAGATTAGCTGGTGAACGTGAATTAGTGGTAGGCACAGGAGTGACACCCCCAACGTCAGTTAATAACTATGAAGTTGGGCTCGAACAACTTGTTTCAATGTCCAAGGATCAAAACGTTTCTGCTTTGCAACAATATGGAGGGGCAAGCTTATCAGATTTACTAAAATCAGATCCTGAGAAGGGAATTAGTGGAGATGACGATGACATGTTAAAAAGGAGAATAGCATTTGGAACGAATACATATCCTAAGAAAAAGGGGCGGAGTTTGTTGATGTTTCTATGGGATGCTTGGCAAGATCTGACCCTTATCATATTGATTATAGCAGCTGCGGTGTCATTGGCACTTGGCATAAAAACTGAGGGCTTGGAAGAAGGATGGTATGATGGGGGAAGCATTGCCTTTGCCGTTTTTCTTGTCATTATAGTAACAGCTGTCAGTGATTATCGACAATCTTTGCAGTTTCGGAATTTGAATTCAGAAAAAGAAAATATACAATTGGAGGTAATTAGAGGCGGCAGAGCAACAAAGATATCAATATTTGATATTGTTGTTGGTGATGTTGTACCTCTTAAAATAGGAGACCAGGTTCCTGCTGATGGAGTTTTAATCACCGCTCATTCACTTGCCATCGATGAATCCAGTATGACTGGTGAAAGCAAGATTATTCACAAGGATCACAAATTACCATTTTTGATGTCTGGTTGCAAAGTAGCTGATGGCGTTGGTGTTATGCTGGTAACTGGTGTTGGTATCAATACTGAGTGGGGATTATTAATGGCAAGCATCTCTGAAGATAATGGAGAAGAGACGCCGTTACAGGTTCCGCCTACTTCATCCGAAACAAAGAAAGAAAAGGCTGTTGTTTTGGAAGTACGTTTGAATGGAGTTGCAACTTTTATCGGCATAGTAGGTCTTACAGTAGCTGTTTCTGTGCTAGCGGTCCTGTTGGGCAGATACTTTTCTGGCAATACAAGAGATCTAGATGGAAACGTCCAATTTGTTGCCGGCCAGACGAGTATTAGTAGTGCAATAGATGGGGTCATCAAAATTTTTACTATTGCAGTCACTATTGTGGTTGTTGCAGTTCCCGAAGGTCTTCCTCTAGCTGTTACCTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCAGCCTGTGAAACTATGGGCTGTGCAACAACAATTTGCAGTGATAAAACAGGAACATTGACCTTGAATCAGATGACTGTGGTTGAGGCATGTGTTGGGAGGAAGAAATTGAATCCGCCAGATGACTCATCACAGTTGCATACAGAAGTTTTATCTCTGATACATGAAGGCATTGCACAGAATACTACTGGATCAGTTTTTGTGCCAAAGGATGGCGGGGAGACTGAGGTATCTGGATCTCCTACTGAAAAGGCAATCCTTTCTTGGGCAGTCAAGTTGGGGATGAATTTTGATCTTATCAGATCAAATTCAACAGTTCTCCATGTCTTTCCCTTCAATTCTGAGAAAAAGCGAGGCGGTGTTTTGCTGAAGCAGGTGGACTCCAAAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTGCTAGGCAAATGCGCTCAATATCTTGATTCAAATGGTTGCTTGCAATCTGTTGAAGAAGAGGGGGAATTTTTCAAGGCAGCTATTGAAGACATGGCTGCTCGCAGCTTGCGGTGTGTTGCCATTGCATACAGGTCATATGAATTGGACAAAGTTCCTTCTAATGAGGAGGATTTGGCCCAGTGGTCCTTACCTGAAGATGAGCTTGTTTTGCTTGCTATTGTTGGCATAAAGGATCCTTGCCGCCCTGGTGTCAAAGATGCAGTGGCAGTATGCACTGCAGCTGGTGTTAAGGTGCGCATGGTTACGGGAGACAATCTTCAGACAGCAAAGGCAATAGCTTTGGAGTGTGGGATACTTGCTTCACATTTAGATGCTGTTGAACCGAATATAATCGAAGGAAAGACATTCCGTGCATTATCTGAAAAAGAAAGGGAACAAGTTGCTAAAAAAATAACAGTGATGGGGAGGTCTTCTCCTAATGACAAGCTTTTACTTGTTCAAGCACTGCGTAAAGGAGGCGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCACCAGCGCTTCATGAGGCAGATATTGGTCTTTCTATGGGCATTCAGGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGACAACTTTGCATCAGTAGTTAAGGTTGTCCGCTGGGGCCGTTCTGTATCTGCAAATATTCAGAAATTTATACAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTGCGATAAATGTTGTCGCAGCAGTATCTTCTGGTGCTGTCCCTTTAAATGCAGTGCAGCTTTTGTGGGTTAACCTTATCATGGACACACTTGGAGCCCTGGCACTTGCTACTGAACCGCCAACAGACCACCTTATGCACAGATCACCAGTTGGTCGAAGGGAACCTCTTATAACGAATATAATGTGGAGGAACTTGACTGTACAGGCTGTATATCAAGTTGCGGTTCTCCTTGTTCTTAATTTCTCCGGAGAAAGTATTCTGGGTACTAATAACTCTGAAGTCGAGACCTTGAGACTGAAGAATACTTTGATTTTCAATTCATTCGTCCTCTGCCAAATATTCAATGAGTTCAATGCTCGAAAACCAGACCAAATGAATGTGTTCAGCGGAGTGACCAAGAACCGTCTATTTGTGGGAATTGTGGGAATGACCTTTCTACTTCAGATACTCATCATCGAGTTCCTTGGAAAGTTCACTAGCACGGTGAGGCTTGATTGGAAGCTGTGGCTCGTTTCTCTAATTATTGGTCTTGTCAGTTGGCCTCTTGCTATGCTTGGAAAACTCATTCCAGTTCCTGAAACACCATGGTCCCGCTCCTGTAAGAAGATAATTATGCGACTTAAGAGATCGAGAACCCGTGCTACCCAATAG 3396 0.442 MEGDFRVDDLFLSIIQVMQVATMDSSISRSSNSSTNGLLSVNIPSHHDDPLPPQINGDGDDDDVIDPDDPFDVARTKNAPHETLKRWRQAALVLNASRRFRYTLDLKKGEEDEHKKGLIRAHAQVIRAALLFRLAGERELVVGTGVTPPTSVNNYEVGLEQLVSMSKDQNVSALQQYGGASLSDLLKSDPEKGISGDDDDMLKRRIAFGTNTYPKKKGRSLLMFLWDAWQDLTLIILIIAAAVSLALGIKTEGLEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFRNLNSEKENIQLEVIRGGRATKISIFDIVVGDVVPLKIGDQVPADGVLITAHSLAIDESSMTGESKIIHKDHKLPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDNGEETPLQVPPTSSETKKEKAVVLEVRLNGVATFIGIVGLTVAVSVLAVLLGRYFSGNTRDLDGNVQFVAGQTSISSAIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGCATTICSDKTGTLTLNQMTVVEACVGRKKLNPPDDSSQLHTEVLSLIHEGIAQNTTGSVFVPKDGGETEVSGSPTEKAILSWAVKLGMNFDLIRSNSTVLHVFPFNSEKKRGGVLLKQVDSKVHIHWKGAAEIVLGKCAQYLDSNGCLQSVEEEGEFFKAAIEDMAARSLRCVAIAYRSYELDKVPSNEEDLAQWSLPEDELVLLAIVGIKDPCRPGVKDAVAVCTAAGVKVRMVTGDNLQTAKAIALECGILASHLDAVEPNIIEGKTFRALSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVSANIQKFIQFQLTVNVAALAINVVAAVSSGAVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLTVQAVYQVAVLLVLNFSGESILGTNNSEVETLRLKNTLIFNSFVLCQIFNEFNARKPDQMNVFSGVTKNRLFVGIVGMTFLLQILIIEFLGKFTSTVRLDWKLWLVSLIIGLVSWPLAMLGKLIPVPETPWSRSCKKIIMRLKRSRTRATQ 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1821 1131 Gene3D - 227 1095 - -
Dere12g1821 1131 MobiDBLite consensus disorder prediction 27 42 - -
Dere12g1821 1131 SFLD p-type atpase 518 895 IPR044492 -
Dere12g1821 1131 SMART Cation_ATPase_N_a_2 173 249 IPR004014 -
Dere12g1821 1131 SUPERFAMILY HAD-like 534 948 IPR036412 -
Dere12g1821 1131 Gene3D - 546 743 IPR023299 GO:0000166
Dere12g1821 1131 MobiDBLite consensus disorder prediction 27 62 - -
Dere12g1821 1131 Pfam Ca2+-ATPase N terminal autoinhibitory domain 68 110 IPR024750 GO:0005516
Dere12g1821 1131 PRINTS P-type cation-transporting ATPase superfamily signature 843 862 - -
Dere12g1821 1131 PRINTS P-type cation-transporting ATPase superfamily signature 758 768 - -
Dere12g1821 1131 PRINTS P-type cation-transporting ATPase superfamily signature 343 357 - -
Dere12g1821 1131 PRINTS P-type cation-transporting ATPase superfamily signature 736 747 - -
Dere12g1821 1131 PRINTS P-type cation-transporting ATPase superfamily signature 536 550 - -
Dere12g1821 1131 PRINTS P-type cation-transporting ATPase superfamily signature 867 879 - -
Dere12g1821 1131 FunFam Calcium-transporting ATPase 546 743 - -
Dere12g1821 1131 Pfam haloacid dehalogenase-like hydrolase 533 857 - -
Dere12g1821 1131 FunFam Calcium-transporting ATPase 736 888 - -
Dere12g1821 1131 Pfam E1-E2 ATPase 297 405 - -
Dere12g1821 1131 NCBIfam calcium-translocating P-type ATPase, PMCA-type 154 1106 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Dere12g1821 1131 CDD P-type_ATPase_Ca_PMCA-like 203 976 - -
Dere12g1821 1131 Gene3D - 199 395 - -
Dere12g1821 1131 Gene3D - 533 888 IPR023214 -
Dere12g1821 1131 Gene3D - 81 133 - -
Dere12g1821 1131 FunFam Calcium-transporting ATPase 79 135 - -
Dere12g1821 1131 Pfam Cation transporting ATPase, C-terminus 928 1104 IPR006068 -
Dere12g1821 1131 NCBIfam HAD-IC family P-type ATPase 809 929 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1821 1131 NCBIfam HAD-IC family P-type ATPase 472 566 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1821 1131 ProSitePatterns E1-E2 ATPases phosphorylation site. 538 544 IPR018303 -
Dere12g1821 1131 PANTHER CATION TRANSPORTING ATPASE 154 1106 - -
Dere12g1821 1131 FunFam Calcium-transporting ATPase 227 284 - -
Dere12g1821 1131 Pfam Cation transporter/ATPase, N-terminus 182 244 IPR004014 -
Dere12g1821 1131 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 543 740 IPR023299 GO:0000166
Dere12g1821 1131 FunFam Calcium-transporting ATPase 860 1108 - -
Dere12g1821 1131 FunFam Calcium-transporting ATPase 274 395 - -
Dere12g1821 1131 SFLD C1.7: P-type atpase like 518 895 - -
Dere12g1821 1131 SUPERFAMILY Calcium ATPase, transmembrane domain M 180 1106 IPR023298 -
Dere12g1821 1131 SUPERFAMILY Calcium ATPase, transduction domain A 297 392 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1821 Dere-ChrDere12 30869433 30884668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1821 31 1126 Primary Pumps ATPases AT3G21180 73.479 0.0 1608