Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1805 ATGGAGAAATACGAGAAGCTGGAGAAGGTCGGAGAAGGGACCTACGGGAAGGTATACAAGGCGAAGGAGAAGGCTACCGGGCAGCTGGTGGCTCTGAAGAAAACGCGCTTGGAGATGGACGAGGAGGGAATTCCTCCAACTGCTCTTCGAGAAGTCTCCCTCCTTCAGATGCTCTCCCAGTCCCTCTACATTGTCCGCCTGCTCTCTGTCGAGCATGTTGACAAGACCCCAAAGGAGGCGCTGGCGGCTGGTGGCCATCCCTGTACCAAGCCCCTCCTCTACCTGGTCTTTGAGTACCTAGACACTGATCTTAAGAAGTTTATTGATTCCCACCGCAAGGGTCCCAACCCCAGGCCTCTTCCTCCTACCCTTATTCAGAGCTTCCTTTTCCAGCTTTGCAAGGGTGTTGCCCACTGCCATAGCCACGGCGTCCTCCACCGTGACCTCAAACCCCAGAATCTACTTCTTGACCAACAGAAGGGAATTCTCAAGATTGCTGACCTTGGTCTTGGACGAGCCTTCACTGTCCCTCTGAAAAGCTACACGCATGAGATTGTCACTCTTTGGTACAGAGCACCTGAGGTTCTGCTGGGATCCACTCATTACTCCACTGGGGTTGATATGTGGTCCGTTGGATGCATTTTTGCTGAAATGGTGAGAAGGCAAGCTCTATTTCCTGGAGATTCTGAGTTCCAACAGCTACTTAATATATTCAGGTTGTTGGGAACTCCAAATGAGGAGCAATGGCCTGGAGTTACTTCTTTGAGGGATTGGCATGTCTACCCACGGTGGGAACCACAGAACTTGGCACGGGCTGTTCCATCCTTGGGACCTGATGGAGTAGATCTTCTTTCGAAAATGCTCAAGTATAACCCTGCTGAGAGGATCTCTGCCAAGGCAGCACTTGATCATCCCTACTTTGACAGCCTTGACAAATCTCAGTTTTAA 948 0.5105 MEKYEKLEKVGEGTYGKVYKAKEKATGQLVALKKTRLEMDEEGIPPTALREVSLLQMLSQSLYIVRLLSVEHVDKTPKEALAAGGHPCTKPLLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLNIFRLLGTPNEEQWPGVTSLRDWHVYPRWEPQNLARAVPSLGPDGVDLLSKMLKYNPAERISAKAALDHPYFDSLDKSQF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1805 315 PANTHER CELL DIVISION PROTEIN KINASE 1 307 - -
Dere12g1805 315 FunFam Cyclin-dependent kinase B2,2 1 101 - -
Dere12g1805 315 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Dere12g1805 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Dere12g1805 315 Pfam Protein kinase domain 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1805 315 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Dere12g1805 315 SUPERFAMILY Protein kinase-like (PK-like) 1 310 IPR011009 -
Dere12g1805 315 Gene3D Transferase(Phosphotransferase) domain 1 103 314 - -
Dere12g1805 315 ProSiteProfiles Protein kinase domain profile. 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1805 315 SMART serkin_6 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1805 315 FunFam Cyclin-dependent kinase 2 103 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1805 Dere-ChrDere12 30731206 30733268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1805 1 315 Core Cell Cycle Gene Families AT3G54180 84.127 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Dere12g1805 Pkinase 5.7e-66 CL0016