Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1804 ATGGCGAAAACATCACAACGAAAGCCTAAGAACGCCGGAAACGCTACTAACACCACCAAACCCACAAGCACGAAGGTGAAGCGAACTCGCAAAAGCATTCCAAGAGACTCTCCTTCACAAAGAAGCTCCATCTATCGCGGTGTCACAAGGCATCGTTGGACGGGTCGATATGAGGCGCATCTCTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGTGTATCTGGGGGCATATGATGATGAAGAGGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGACACCATCCTCAATTTTCCTTTAACAAATTATCAAGAGGAGCTCAAGGAGATGGAGGGTCAATCAAAGGAAGAATACATTGGATCCCTAAGAAGAAAAAGCAGTGGGTTCTCTCGAGGAGTCTCAAAATACAGAGGCGTCGCAAGACACCATCACAATGGAAGATGGGAGGCACGGATTGGCAGAGTCTTCGGCAACAAATACCTATACCTCGGAACTTACGCTACACAAGAAGAAGCAGCCACGGCATATGATATGGCAGCCATAGAGTACCGAGGAGTTAACGCCGTTACAAACTTTGATCTCAGCCGTTACATCAAATGGCTACGTCCTAAAACCCAAGACACCCATGAAAACCCTACGATCAATGATAACGCTGAGTCTGATTCTGTGCCTAACCCTAATATTAATCATGAACTTGAATTAGGCTTCGATGTGTCCCACCAGCTCTGCTCAAACTCCGGCGACACAACGGCGGCGGCTCCTCCGCGATCCGGGAGCGGCGCTGCCGCGTCATCCGCGCTAGGGCTTCTCTTGCAGTCGGCAAAGTTTAAGGAAATGCTAGAGAGGACTTCAGCTGGAGATCATAATTATTCTGCAACAGAAACCTCAGAATCAAACCCTCCTCGTCGTACATTTCCTGAAGATATTCAAACATTCTTCGACTGTCAAGACTCAAGCAGCTACCCTGAGACTGATGACATCATATTTGGTGATTTGAGCTCCATTGCTGCTCCAATTTTTCATTGTGAGCTTGATGCTTAG 1074 0.4758 MAKTSQRKPKNAGNATNTTKPTSTKVKRTRKSIPRDSPSQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGVNAVTNFDLSRYIKWLRPKTQDTHENPTINDNAESDSVPNPNINHELELGFDVSHQLCSNSGDTTAAAPPRSGSGAAASSALGLLLQSAKFKEMLERTSAGDHNYSATETSESNPPRRTFPEDIQTFFDCQDSSSYPETDDIIFGDLSSIAAPIFHCELDA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1804 357 FunFam AP2-like ethylene-responsive transcription factor 145 206 - -
Dere12g1804 357 MobiDBLite consensus disorder prediction 1 47 - -
Dere12g1804 357 SUPERFAMILY DNA-binding domain 43 111 IPR016177 GO:0003677
Dere12g1804 357 SUPERFAMILY DNA-binding domain 145 206 IPR016177 GO:0003677
Dere12g1804 357 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Dere12g1804 357 PRINTS Ethylene responsive element binding protein signature 186 206 IPR001471 GO:0003700|GO:0006355
Dere12g1804 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 263 - -
Dere12g1804 357 SMART rav1_2 146 210 IPR001471 GO:0003700|GO:0006355
Dere12g1804 357 SMART rav1_2 44 116 IPR001471 GO:0003700|GO:0006355
Dere12g1804 357 Gene3D AP2/ERF domain 44 112 IPR036955 GO:0003700|GO:0006355
Dere12g1804 357 Gene3D AP2/ERF domain 145 206 IPR036955 GO:0003700|GO:0006355
Dere12g1804 357 Pfam AP2 domain 44 102 IPR001471 GO:0003700|GO:0006355
Dere12g1804 357 Pfam AP2 domain 145 196 IPR001471 GO:0003700|GO:0006355
Dere12g1804 357 ProSiteProfiles AP2/ERF domain profile. 146 204 IPR001471 GO:0003700|GO:0006355
Dere12g1804 357 MobiDBLite consensus disorder prediction 217 241 - -
Dere12g1804 357 CDD AP2 145 206 IPR001471 GO:0003700|GO:0006355
Dere12g1804 357 MobiDBLite consensus disorder prediction 296 315 - -
Dere12g1804 357 MobiDBLite consensus disorder prediction 218 238 - -
Dere12g1804 357 MobiDBLite consensus disorder prediction 1 23 - -
Dere12g1804 357 ProSiteProfiles AP2/ERF domain profile. 44 110 IPR001471 GO:0003700|GO:0006355
Dere12g1804 357 MobiDBLite consensus disorder prediction 297 315 - -
Dere12g1804 357 FunFam AP2-like ethylene-responsive transcription factor 43 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1804 Dere-ChrDere12 30724784 30727857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1804 40 208 AP2-EREBP Transcription Factor Family AT5G57390 73.373 6.00e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere12g1804 AP2 5e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1804 12 30724784 30727857 Dere12g1804 12 30724784 30727857 ECH