Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1796 ATGATATTGGGAGTAGGATATTCGGGCTTGCATAATTATACTCCTTTTATCAGAAGACGGAGGGAGCGTCTTCTTTTGAGCAAGGGTCTATTGACACCATCATCGTCAGATACAAGGAAAAGAATGGAGAAGTCATGGCAGAATCTGTTATCTTCCTTGGAAATGCATGAGGAGATGGACCATCAGGAATTGCAATGCCCCACGAACTATCTTGATGACGATCAGTTGGTGCAGGAGGAGACCAACATTGCTGGTGGTAACAATAGAAACAGAAAAAGAAACAGAAACAGGTGCTCCTACGATTCACAAAACCATGTTGCTTCGTCTCCAGCAACCTACATTCTGTCGTTCGACAAATCCACAATCCATGAGGACCCTTATCACTGCTTCGACTTCAATAATAATAACGATAAGGCCACCTTTGGAGATGTCTCTGCCGCCACACATTCCGTGCCTTCCTCCTCCACAAACAACAACCTGGGAGCGAAGAAGTCTAGAAGCTCTTCTGAGACACTTTATCATATTATGACGGAGCGAAAAAGGAGACAGACTATCACTGAGAAGTTCATTGCTCTTTCAGCCACCATTCCTGGCTTGAAGAAGATGAACAAGGCGTCCGTGCTCGAGGAAGCTATTAACTATCATCATCTCACTGCACCCAAAAGTTGCGTCTTGCCATTTGCAAATACTCTCGGTATTACCATTGTTGCTCAGATGGGTGAGAACTACAGGATGATAGCGAAGGATCTAGTGAAGAACCTCAAGCTGGCTCTGCGATAG 780 0.4487 MILGVGYSGLHNYTPFIRRRRERLLLSKGLLTPSSSDTRKRMEKSWQNLLSSLEMHEEMDHQELQCPTNYLDDDQLVQEETNIAGGNNRNRKRNRNRCSYDSQNHVASSPATYILSFDKSTIHEDPYHCFDFNNNNDKATFGDVSAATHSVPSSSTNNNLGAKKSRSSSETLYHIMTERKRRQTITEKFIALSATIPGLKKMNKASVLEEAINYHHLTAPKSCVLPFANTLGITIVAQMGENYRMIAKDLVKNLKLALR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1796 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Dere12g1796 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 215 IPR036638 GO:0046983
Dere12g1796 259 Gene3D - 164 222 IPR036638 GO:0046983
Dere12g1796 259 Pfam Helix-loop-helix DNA-binding domain 174 214 IPR011598 GO:0046983
Dere12g1796 259 SMART finulus 175 223 IPR011598 GO:0046983
Dere12g1796 259 PANTHER BHLH TRANSCRIPTION FACTOR 45 214 - -
Dere12g1796 259 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1796 Dere-ChrDere12 30599934 30603729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1796 110 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 38.182 1.77e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere12g1796 HLH 5.6e-08 No_clan