Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1795 ATGGCGGTGAGAGTGAGAGAGCAGGTTCTTATTCAAGGTATATCATTACCAAGGAGCCTTTTCAACCTATGCAACATGGCTTTCTTAGGAGCATTGCTCATCGTCCTACTTCAATACCCAATTTCCATAGTCAGTCTCTCACATCCAAGGCATCACCACTCTTCTCACTCTCTGCTTACAGATAAGTCTGCTCTTCTGGAATTCAGAAAAGCAATCATATCTGATCCGTATTCCACACTTGCTAACTGGGATGAAGCCGTTCATGTGTGCAATTTCACTGGAGTTAAATGCAGTGAATTCCAGCATCGAGTCACACAACTAATCCTTAAAGAAACTTATCTCGTTGGGTTGCTTTCACCATTCCTTTCCAATCTCACGGCACTGCACATCCTTGACATTGTTGACAATCACTTATTTGGCGTTATTCCACCAGAATTTTCCTCCCTTCGACGCCTCCACCGACTCCGTCTTGAGGGCAACAATTTGCATGGTCCCATACCAGACTCCTTTTCCCAGCTTTCCAAACTTAAGGTGCTGCATATCAAAGAAAGTAACATAACTGGTTCTCTTTCTCCATCTCTCTTCTCCAATTGCACTCTACTGGATAACGTGGACCTTTCCAGCAACTTCCTCACTGGTGAGATCCCAGAGGAGATTGGAAACTGTCCAGGCCTGTGGAGTCTCAGTCTATACGATAATCAATTTACCGGACAGATTCCTCTCTCTCTGTCTAATCTGTCACTTGTAAACTTAGATGTAGAGTACAATCATTTGTCCGGAGAATTGCCCACAGAGTTTGTAAGCAGCTGCTCAGAACTTCTCTACCTGCATTTATCATACAACCATATGGTAAGTCATGATAGTAATACCAATCTTGATCCATTTTTTGCTGCTCTTAGAAACTGCAGCAGTCTAGAGGAGCTTGAATTGGCTGGAATGGGACTTGGGGGGCGGTTCTCCAATACTGTCTGTCAAGTTGGCATCAGTCTGAAGAGTCTACTACTGCAGGAAAACCAAATATATGGATCAATCCCTCACACTGTATCAAATCTTTCCAGCCTTTTGATCCTGAATTTAACATCCAATATTCTCAATGGAACTATTTCACCAGAGATCAGTAAGTTGTCAAACTTGGAACAACTTTTCTTATCTAACAACCATTTCAAAACTGCAATTCCAGAAGCACTGGGCAACTGTCTACATCTGGGTCTGCTAGATCTGTCACACAACGAATTTTCAGGAGAGATTCCAGAAAGTCTAGGAAATTTGGTTCGACTAAATTCTTTGTTCCTCAACAATAACCATCTCACAGGAAAAATACCTTCTACATTAGGGCGGTGCATTGATCTGTACAGGCTGGACTTGTCCTATAATAGATTAACAGGAAGCATCCCATCAGAAATCTCAGGCCTGCACGAAATTAGAATTTTCATAAATCTCTCTCACAACCAGCTTGAAGGTCCCCTGCCAATTGAGCTCAGCAAACTAGAAAAGGTTCAAGAGATGGATTTTTCATCAAATCACCTAAATGGAACTATCTTCCCTCAGATAGCAAGCTGCATTGCTGCATCAATGATAAATTTTTCAAACAATTTTCTACAAGGTGAGCTTCCAGAATCCTTAGGTGAACTGAAGAACCTTGAATCTTTTGATGTTTCACGAAACCAGTTGTCTGGATTGATTCCCAAAAGTCTCAGTCAAATTGACACGCTTACTTTCCTCAATTTATCATTTAACAGCCTAGAAGGAATGGTTCCATCCGGTGGTATCTTTAATTCAGCATCAAATTTGTCATTCTTAGGAAACCCAAGTCTTTGTGGGGAGATTACAGGCAACTTTTCGTGTTTTCTAAGGGGAAGGTTGTTTCACAATCGCCTGTTCTTGAGTATATTCATCTTAGTCTCCTCTATATCAACATTCTTGTCAACAATTTGCTGTGTAATTGGTTGTCAGCGTCTTAAAGTGATTATTTCCTCCCAGGGAGCAGAGGCGGGTAGAAAACCAGCTAGATCCGACCTGATATGTAACTTCCCAAGAATCACATATAAGGAACTATCAGAGGCCACTGGAGGATTTGATGATCAGAGACTAATTGGATCAGGTAGCTATGGACGTGTCTACAAGGGAGTTCTTCCAAACAAGACATCAATAGCAGTCAAGGTGCTGCATTTGCAATCTGGAAACTCCACCAAAAGCTTTAACAGAGAATGCCAAGTTTTAAAGAGGATTCGACACAGGAACCTGATAAGGATTATCACAGCATGTAGCTTACCTGATTTTAAGGCTCTTGTTCTGCCTTATATGGCCAATGGGAGCTTGGAGAGCCGCCTCTATGCTTCTTCTGGATCTTCTGACCTGAGCATCATCCAGAGGGTGAACATTTGCAGCGACATTGCTGAAGGGATGGCCTATCTGCATCATCATTCTCCGGTCAGAGTCATACACTGTGATCTAAAGCCAAGCAATGTTCTTCTTAATGATGAAATGACAGCACTAGTTTCTGATTTTGGGATTGCAAGGCTAATTATGAGTGCCGGCGGAGGAAATGCTGGAGTTAATGATAACATGGGGAGCTCCACTGCGAATTTGTTACGTGGATCCATTGGATACATTGCACCAGAGTATGGATTTGGATCAAACACATCTACAAAAGGAGATGTTTACAGCTTTGGCATTCTAGTTCTTGAGATGGTAACTAGAAAAAGACCAACAGATGACATATTTTCTGGTGGCTTAAGCCTACCCAAATGGGTAAAAAGTCATTATCATGGAAGGGTAGAAAAGGTGATAGACCCTGCTTTGTTGACTGCTTCAAGAGATCAGTCGCAGGAGGTAAAAGGAATGTGGGAAGTTGCAATCGGAGAGTTAATCGAGCTGGGGATCCTTTGCACACAGGAGTCACCTTCTACAAGGCCTAGCATGCTTGATGCAGCAGATGACTTGGATCGTCTCAAAAGATACCTTACTGGGGACACAACTAGGACTTTTGCCTCTTCTCTTGGAATTTCATCTTCCACTATAAACGATTATTAA 3033 0.4217 MAVRVREQVLIQGISLPRSLFNLCNMAFLGALLIVLLQYPISIVSLSHPRHHHSSHSLLTDKSALLEFRKAIISDPYSTLANWDEAVHVCNFTGVKCSEFQHRVTQLILKETYLVGLLSPFLSNLTALHILDIVDNHLFGVIPPEFSSLRRLHRLRLEGNNLHGPIPDSFSQLSKLKVLHIKESNITGSLSPSLFSNCTLLDNVDLSSNFLTGEIPEEIGNCPGLWSLSLYDNQFTGQIPLSLSNLSLVNLDVEYNHLSGELPTEFVSSCSELLYLHLSYNHMVSHDSNTNLDPFFAALRNCSSLEELELAGMGLGGRFSNTVCQVGISLKSLLLQENQIYGSIPHTVSNLSSLLILNLTSNILNGTISPEISKLSNLEQLFLSNNHFKTAIPEALGNCLHLGLLDLSHNEFSGEIPESLGNLVRLNSLFLNNNHLTGKIPSTLGRCIDLYRLDLSYNRLTGSIPSEISGLHEIRIFINLSHNQLEGPLPIELSKLEKVQEMDFSSNHLNGTIFPQIASCIAASMINFSNNFLQGELPESLGELKNLESFDVSRNQLSGLIPKSLSQIDTLTFLNLSFNSLEGMVPSGGIFNSASNLSFLGNPSLCGEITGNFSCFLRGRLFHNRLFLSIFILVSSISTFLSTICCVIGCQRLKVIISSQGAEAGRKPARSDLICNFPRITYKELSEATGGFDDQRLIGSGSYGRVYKGVLPNKTSIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLESRLYASSGSSDLSIIQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDEMTALVSDFGIARLIMSAGGGNAGVNDNMGSSTANLLRGSIGYIAPEYGFGSNTSTKGDVYSFGILVLEMVTRKRPTDDIFSGGLSLPKWVKSHYHGRVEKVIDPALLTASRDQSQEVKGMWEVAIGELIELGILCTQESPSTRPSMLDAADDLDRLKRYLTGDTTRTFASSLGISSSTINDY 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1795 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 674 767 - -
Dere12g1795 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Dere12g1795 1010 Pfam Leucine Rich Repeat 546 566 IPR001611 GO:0005515
Dere12g1795 1010 Gene3D Transferase(Phosphotransferase) domain 1 768 997 - -
Dere12g1795 1010 SUPERFAMILY L domain-like 329 607 - -
Dere12g1795 1010 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 91 286 - -
Dere12g1795 1010 FunFam LRR receptor-like serine/threonine-protein kinase EFR 329 616 - -
Dere12g1795 1010 ProSiteProfiles Protein kinase domain profile. 692 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1795 1010 Pfam Leucine rich repeat N-terminal domain 60 98 IPR013210 -
Dere12g1795 1010 Gene3D Ribonuclease Inhibitor 248 615 IPR032675 -
Dere12g1795 1010 SMART serkin_6 692 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1795 1010 Gene3D Phosphorylase Kinase; domain 1 674 767 - -
Dere12g1795 1010 Pfam Leucine rich repeat 150 209 IPR001611 GO:0005515
Dere12g1795 1010 CDD STKc_IRAK 698 984 - -
Dere12g1795 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 405 981 - -
Dere12g1795 1010 SUPERFAMILY Protein kinase-like (PK-like) 674 981 IPR011009 -
Dere12g1795 1010 SMART LRR_typ_2 173 197 IPR003591 -
Dere12g1795 1010 SMART LRR_typ_2 423 447 IPR003591 -
Dere12g1795 1010 SMART LRR_typ_2 149 172 IPR003591 -
Dere12g1795 1010 SMART LRR_typ_2 544 567 IPR003591 -
Dere12g1795 1010 SMART LRR_typ_2 375 399 IPR003591 -
Dere12g1795 1010 ProSitePatterns Protein kinases ATP-binding region signature. 698 720 IPR017441 GO:0005524
Dere12g1795 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 768 994 - -
Dere12g1795 1010 SUPERFAMILY L domain-like 59 313 - -
Dere12g1795 1010 Gene3D Ribonuclease Inhibitor 174 247 IPR032675 -
Dere12g1795 1010 Gene3D Ribonuclease Inhibitor 60 173 IPR032675 -
Dere12g1795 1010 Pfam Protein kinase domain 693 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1795 Dere-ChrDere12 30577075 30580482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1795 60 971 Receptor kinase-like Gene Family AT3G47570 34.836 3.80e-159 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere12g1795 Pkinase 1.3e-40 CL0016