Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1766 ATGGCCGTCACAAGTTCAGCATCTGGGCAGCCGCAATTCATTGCGAGCACTGGGAACCGAAGCTCTTCCAATGCTCCACTCATCGAGAACTCTGATACTGATCAAATTGTTGTGCCTGATAGGACAAGCTGGAAAAACTTATTTGCATACATGGGTCCTGGGTTTCTTGTTTCTATTGCATATATAGACCCTGGAAACTTTGAAACGGATCTTCAGTCTGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCCTCTTGTGCTGCTCTTATAATTCAATCAATGGCAGCCAATCTAGGAGTTGTCACTGGAAAACATTTAGCAGAGCATTGTAGAGCTGAATATCCCCGGGCAACAAATTTCATCTTATGGGTTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTAATCGGAACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTCTTGACGGGGCTCAGTACATTGATCCTCTTGGCATTACAGCAATATGGGGTGAGGAAACTTGAATTCTTGATTGCGTTTCTGGTATTTACAATTGCTGCATGCTTTTTTGCTGAACTTGGGTATGCAAAGCCTGATGCTGAAGAAGTTCTCGAGGGTCTTTTTGTACCAAAACTCAAAGGGAGTGGTGCTACGGGTCTTGCCATTTCACTCCTTGGGGCTATGGTTATGCCGCACAATCTCTTCCTCCACTCAGCATTGGTGCTCTCTAGAAAGATACCACGATCAGTTCATGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTCATGGTGGCCTTCCTCATAAATGTTTCTGTTATTTCCGTCAGTGGTGCAGTTTGCAATTCTTCGAATTTGAATGCAGAAGATCAAGCAAGCTGTCAGGATTTGGACTTGAACAAAGCCTCCTTTCTACTAAGAAATGTATTGGGTAAATGGAGTTCAAAACTGTTCGCAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAGTATGTCATGCAGGGGTTTCTTGATTTACGACTGACACCTTGGATTCGAAATCTTTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCTGTCATTGGCGGCTCTGCTGGGGCAGGGAAGCTCATAATTATTGCATCAATGATCCTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAACCAAGATGGGAGCGAATGTCAACTCTTTCACGATTTCAGCTGTGACTTGGATCATTGGTTCGCTCATAATGGCCATAAATATATATTATTTACTGACTGGCTTCATCAAGTTGCTTCTTCATAGCAAAGTGGAAATTGTCGGTAAGGTGTTTCTGGGGATCTTAGGGTTCTCTGGTATAGCAATATATTTGGCTGGTATAGCTTATCTGGTGTTTCGCAAAAACAAAGAGGCCACACACCTTCTGGCACTAACAACACCAGAAAGTAGGCAAATGGCAAATGAACAAGGCAATGGATCAATATATTGCCTCCCAAGAGAAGACATAATGAGCATGCAATTGCCTCAAAGAAGTAATCCAGCTGATCTTTGA 1632 0.4252 MAVTSSASGQPQFIASTGNRSSSNAPLIENSDTDQIVVPDRTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSMAANLGVVTGKHLAEHCRAEYPRATNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFFAELGYAKPDAEEVLEGLFVPKLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVHGIKEACRFYMIESAFALMVAFLINVSVISVSGAVCNSSNLNAEDQASCQDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLTPWIRNLLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGANVNSFTISAVTWIIGSLIMAINIYYLLTGFIKLLLHSKVEIVGKVFLGILGFSGIAIYLAGIAYLVFRKNKEATHLLALTTPESRQMANEQGNGSIYCLPREDIMSMQLPQRSNPADL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1766 543 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 MobiDBLite consensus disorder prediction 1 27 - -
Dere12g1766 543 NCBIfam Nramp family divalent metal transporter 52 420 - -
Dere12g1766 543 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 23 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere12g1766 543 Hamap Divalent metal cation transporter MntH [mntH]. 31 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1766 Dere-ChrDere12 30252024 30257261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1766 15 537 Inorganic Solute Cotransporters AT1G15960 80.952 0.0 870