Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1763 ATGCTGTCTCGAGGAGAAGAAGCTGTTGTTGCGGCTGAAACAGCTGCCCCAATGCCTGGTGAGCCAATGGACATCATGACAGCCTTGCAGCTTGTGCTGAGAAAATCACTGGCTTATGGCGGTCTTTCTCGGGGCCTTCATGAAGGAGCAAAGGTCATTGAAAAACATGCTGCACAGCTCTGTGTTCTAGCAGAGGATTGTGACCAACCTGACTACGTTAAACTTGTCAAAGCCCTTTGTGCTGAGCACAATGTTAGCCTGTTGACAATTCCTAGTGCAAAAACCCTTGGAGAGTGGGCTGGTTTGTGTAAGATTGACTCAGAAGGAAAGGCTAGGAAGGTAGTTGGTTGCTCCTGTGTGGTTGTCAAGGATTTCGGGGAGGAACATGAAGCCTACAATGTAGTTTTGCAGCATGTGAAATCTCACTGA 429 0.4802 MLSRGEEAVVAAETAAPMPGEPMDIMTALQLVLRKSLAYGGLSRGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTIPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEEHEAYNVVLQHVKSH 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1763 142 PRINTS Ribosomal protein S12E family signature 32 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere12g1763 142 PRINTS Ribosomal protein S12E family signature 46 62 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere12g1763 142 PRINTS Ribosomal protein S12E family signature 112 125 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere12g1763 142 PRINTS Ribosomal protein S12E family signature 87 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere12g1763 142 PANTHER 40S RIBOSOMAL PROTEIN S12 17 142 - -
Dere12g1763 142 ProSitePatterns Ribosomal protein S12e signature. 28 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
Dere12g1763 142 Gene3D - 9 142 IPR029064 -
Dere12g1763 142 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 28 121 IPR004038 -
Dere12g1763 142 FunFam 40S ribosomal protein S12 9 142 - -
Dere12g1763 142 SUPERFAMILY L30e-like 22 140 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1763 Dere-ChrDere12 30233239 30234263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1763 21 142 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.590 2.77e-66 196