Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1759 ATGGACAATGAGGAAATTCCGTCAGCCCCTTCAACACCTGCAACTCCAGGGACTCCTGGTGCTCCTCTGTTTGGTGGGTTCAGGTCAGAGAGAAATGTGAATGGAATTGGTAAGAAATTACTTCTCAAGAGTTGCAAGTGTTTCAGTGTTGAAGAATGGAACTTAGAAGATGGAGCCTTACCCAGAGTCACTTGCTCATTGCCTCCTCCTCCTGTCCCTCTCGTAAGAAAGGTAGGAGCTGAGTTTATAGGTACTTCGATTCTCATGTTTGCTGGGATAGCCACTGCAATTGTGAACCAAAAGACACCAGGCTCTGAGACCCTCATTGGATGTGCTGCCTCTGCTGGTCTTGCTGTTATGATCGTCATCCTCTCCACCGGCCACATCTCTGGCGCTCATCTCAACCCTGCTGTCACCATTTCCTTTGCTGCATTAAAGCACTTCCCATGGAAACATGTGCCTGTGTATATTGGTGCACAAGTTACTGCGTCTATAGGTGCATCATTTGCCTTGAAGGGAATATTTCACCCCTTCATGAGTGGAGGAGTCACAGTTCCTTCGGGAGGATATGGTCAAGCTTTTGCTTTGGAGTTCATTATCAGCTTTATTCTCATGTTCGTTGTCACAGCAGTGGCCACCGACACTAGAGCTGTAGGGGAGCTTGCGGGAATCGCGGTGGGAGCTACTGTCATGCTCAACATACTCATAGCCGGGCCAGCAACAGGAGCGTCAATGAATCCAGTGAGAACATTAGGACCAGCTATTGCTGCAAATAACTACAAAGCAATTTGGATCTATCTCATAGCACCTATACTGGGAGCTCTTGGTGGGGCAGGTACCTATACTGCAGTCAAGCTGCCTGAAGAAGATGGTGAGACCCCGGGAAAGGCTTCAACGCCCAGAAGCTTCAGAAGGTGA 918 0.4869 MDNEEIPSAPSTPATPGTPGAPLFGGFRSERNVNGIGKKLLLKSCKCFSVEEWNLEDGALPRVTCSLPPPPVPLVRKVGAEFIGTSILMFAGIATAIVNQKTPGSETLIGCAASAGLAVMIVILSTGHISGAHLNPAVTISFAALKHFPWKHVPVYIGAQVTASIGASFALKGIFHPFMSGGVTVPSGGYGQAFALEFIISFILMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGASMNPVRTLGPAIAANNYKAIWIYLIAPILGALGGAGTYTAVKLPEEDGETPGKASTPRSFRR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1759 305 CDD MIP 76 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere12g1759 305 Gene3D Glycerol uptake facilitator protein. 71 297 IPR023271 -
Dere12g1759 305 PANTHER AQUAPORIN NIP2-1 47 289 IPR034294 -
Dere12g1759 305 SUPERFAMILY Aquaporin-like 73 290 IPR023271 -
Dere12g1759 305 MobiDBLite consensus disorder prediction 286 305 - -
Dere12g1759 305 Pfam Major intrinsic protein 74 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere12g1759 305 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Dere12g1759 305 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere12g1759 305 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere12g1759 305 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere12g1759 305 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere12g1759 305 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere12g1759 305 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere12g1759 305 FunFam Aquaporin NIP2-1 64 296 - -
Dere12g1759 305 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1759 Dere-ChrDere12 30201682 30204679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1759 1 305 Major Intrinsic Protein MIP AT1G80760 81.877 6.16e-171 474