Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1755 ATGGACCTTCAAAGGTCGAAGCCATGTCCATCTGAAAATTTGAACATCATCTCATTTTCGAATACTCCACCATGCCAAAAAACCTCAATGGATAGCCAAACAGAGAAGAGAAACACAGAAAAAGAAGATCAAAAACAGCCACATGACTCAGGTCCTTCTCTTCTACTGGATCTAAGTCTCTCTAGTAAGGATTCAGCAGATGGATCAAAGCCAGAACTCAACCTCATCAACTGTTTTGATGCCAAGTCATCCATGAACTCCTCAGATTCTTCTCATGAATTGGAGGCCCGGATTTTTTCATGCAACTACTGCCAGCGAAAATTTTATAGCTCGCAGGCACTCGGAGGGCACCAGAATGCACACAAGCGTGAGAGAACTTTGGCAAAAAGAGGACAAAAAATTGGAGCTGCAGTTTCAGTCGACATTGGACAGAGGTACTCTAGTTTGGCTACCCTGCCTTTGCATGGCTCATATAACAGATCACTTGGGATTCAAGCACATTCTATGATTCACAAGCCCTCTTATCAAGCTCCCATTACTGGTTTACCTCGCTCCCATAGTCAAAATGGGTGGTGGAGGCAGCCTATAGATTCACAGCCAGCAATTGGAAAGCTTCCATCTGGAAAAATACATCTTGGAGATGAAACTGAAGCATCCTTTTCTGGTGGAGTTTCAAGGTTAGGGAAGTTTTCTCCACATATAGTGGTGAAAGAGCGAATGGGTGGTTATTGGTTGGGAAGTGTTACTCATGTAAAATCTAAACAAGAGGAGTTGCAAAAGCTTGACTTGTCCCTCAAACTCTAA 804 0.4316 MDLQRSKPCPSENLNIISFSNTPPCQKTSMDSQTEKRNTEKEDQKQPHDSGPSLLLDLSLSSKDSADGSKPELNLINCFDAKSSMNSSDSSHELEARIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQKIGAAVSVDIGQRYSSLATLPLHGSYNRSLGIQAHSMIHKPSYQAPITGLPRSHSQNGWWRQPIDSQPAIGKLPSGKIHLGDETEASFSGGVSRLGKFSPHIVVKERMGGYWLGSVTHVKSKQEELQKLDLSLKL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1755 267 MobiDBLite consensus disorder prediction 33 48 - -
Dere12g1755 267 MobiDBLite consensus disorder prediction 1 69 - -
Dere12g1755 267 FunFam Zinc finger protein 2 77 145 - -
Dere12g1755 267 SUPERFAMILY beta-beta-alpha zinc fingers 96 126 IPR036236 -
Dere12g1755 267 MobiDBLite consensus disorder prediction 8 32 - -
Dere12g1755 267 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Dere12g1755 267 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 267 IPR044246 GO:0009788
Dere12g1755 267 Gene3D Classic Zinc Finger 77 145 - -
Dere12g1755 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1755 Dere-ChrDere12 30170606 30171409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1755 1 267 C2H2 Transcription Factor Family AT5G10970 40.845 2.44e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere12g1755 None None None