Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere12g1750 | ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACAAGAATATGGCTAGGGACGTTCGAAACAGCGGAAGATGCTGCAAGAGCATACGATGAAGCAGCGAGGCTTATGTGTGGGACAAAAGCAAGAACCAATTTTCCGTACAATCCCAATGAGCCACAATCATCTTCTTCCAAGTATCTCTCTGCAACTTTGACGGCCAAGCTTCACAAGTGTCACATGGCGTCACTTTCGCTTCAAATGGCTAACAAGCAGACACCCCCACCACAACAACAAGAGCCTCAGCAACCACAGAGGCCTCAATCTAATAATAACCCATTTGCCTCCGGCAATGCCATTGCCGGAACAAGTGCCGACGCGGCCTTCCGGTGGCCAGAGATGGGACACGAGGAATCACAATGGGTAGAGGGCCAAGGCGAAGTTGGACAGCAGCAATTTCAGCCAGTACTTGAAGATGATCACATAGAGCAGATGATTCAGGAGTTGCTTCATTATGGGTCAATTGAGCTTTCCTCTGTTGGCTCAGCTTAG | 582 | 0.5034 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGTKARTNFPYNPNEPQSSSSKYLSATLTAKLHKCHMASLSLQMANKQTPPPQQQEPQQPQRPQSNNNPFASGNAIAGTSADAAFRWPEMGHEESQWVEGQGEVGQQQFQPVLEDDHIEQMIQELLHYGSIELSSVGSA | 193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere12g1750 | 193 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere12g1750 | 193 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere12g1750 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 65 | - | - | |
| Dere12g1750 | 193 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere12g1750 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere12g1750 | 193 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
| Dere12g1750 | 193 | MobiDBLite | consensus disorder prediction | 99 | 129 | - | - | |
| Dere12g1750 | 193 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere12g1750 | 193 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 6 | 136 | - | - | |
| Dere12g1750 | 193 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677 | |
| Dere12g1750 | 193 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
| Dere12g1750 | 193 | MobiDBLite | consensus disorder prediction | 113 | 129 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere12g1750 | Dere-ChrDere12 | 30108549 | 30109403 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere12g1750 | 1 | 190 | AP2-EREBP Transcription Factor Family | AT5G25190 | 61.579 | 1.78e-74 | 220 |
Transcription factors information