Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1749 ATGGGAAGCCTCGAAGAAATCAAGAAGGAGACTGTCGATCTTGAACGGATACCAGTGGATGAAGTATTCAGAGAGCTCAAGTGTTCCAAAGAGGGTCTAACAAATGAGGAAGGGCAAAAGAGATTGGAAGAAAGCAAAGTGCTGAAATTCCTGGGGTTTATGTGGAATCCTCTATCATGGGTGATGGAAGCTGCTGCTATCATGGCCATTGCATTGGCTAATGGAGGGGGAAAGCCACCAGACTGGCAAGACTTTGTGGGAATAATGACATTGCTTATTATCAACTCCACCATTAGCTTTATAGAAGAGAACAATGCAGGGAATGCTGCTGCAGCCCTCATGGCTGGTCTTGCTCCAAAAACCAAGGTTCTAAGAGATGGAAGGTGGAACGAACAGGACGCTGCTATATTGGTACCGGGAGATATAATCAGCATCAAGCTAGGAGACATTATCCCTGCAGATGCTCGTCTCCTGGAGGGTGATCCACTCAAGATAGATCAGTCAGCACTTACTGGTGAGTCATTGCCTGTCACAAAAAATGCAGGTGATGAAGTCTACTCTGGCTCCACTGTTAAGCAAGGAGAGATTGAGGCTGTTGTAATTGCCACTGGGGTACACACCTTCTTCGGTAAGGCTGCTCACCTTGTGGACAGTACCAATCAAGTCGGCCACTTCCAAAAGGTTTTGACAGCAATTGGTAACTTCTGCATTTGCTCTATTGCTGTGGGGATGATTATAGAGATTGTTGTGATGTACCCGATTCAGCGCCGCAAGTATAGGGATGGAATTGACAATCTCTTGGTGCTTCTCATCGGAGGGATTCCTATTGCCATGCCAACTGTCTTGTCAGTGACTATGGCTATCGGTTCGCATCGGCTTTCCGAGCAAGGAGCCATCACCAAGAGGATGACAGCCATTGAGGAGATGGCAGGGATGGATGTTTTATGCAGTGACAAGACTGGCACTCTAACGTTGAACAAGCTCACTGTAGACAAGACTTTGGTTGAGGTTTTTGAAAAAGATGTTGACAAGGACATGGTAATTTTGCTTGGAGCTAGGGCATCTAGAGTGGAGAATCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGACCCAAAGGAGGCTAGAGATGGCATTCAAGAGGTTCATTTCCTTCCCTTTAATCCGGTGGACAAGCGGACAGCCATAACATACATTGACTCTGCGGGTAATTGGCACAGAGTAAGCAAAGGAGCTCCAGAACAGATTATAGAACTGTGCAATCTCCGGGGAGATGTGTTGAAGAAAGCTCATGCCATTATTGATAAGTTTGCTGATCGTGGCCTTCGCTCCCTTGCTGTTGCCAGACAAGAAGTGCCAGAAAAGACGAAGGAAGGTGCAGGAGGACCATGGCAGTTCGTGGGTCTCTTGCCTCTGTTTGATCCACCAAGGCATGACAGTGCAGAGACCATCAAGCAAGCTCTCCATCTTGGTGTGAACGTTAAGATGATTACAGGTGACCAGCTAGCTATTGGTAAAGAGACCGGTCGCAGGCTTGGCATGGGAAGTAACATGTACCCTTCTTCCTCTCTCCTTGGGGAGCACAAGGATGAGTCCATTGCTGCTCTTCCCATTGATGAGCTCATTGAAAAGGCAGATGGCTTTGCTGGCGTCTTTCCTGAGCACAAGTACGAGATAGTGAAGAGGCTGCAAGATAGGAAACACATATGTGGGATGACTGGAGATGGTGTGAATGATGCACCAGCCTTGAAAAGAGCAGATATTGGAATAGCAGTGGCTGATGCAACCGATGCAGCTCGAAGTGCATCTGACATAGTCCTGACAGAGCCAGGTTTGAGTGTGATTGTGAGTGCAGTATTGACAAGCAGAGCCATTTTCCAGAGGATGAAGAACTACACTATCTATGCGGTCTCCATAACAATCCGTATCGTGCTGGGATTCATGCTCATTGCTCTTATCTGGAAATATGATTTCTCACCCTTCATGGTTTTGATCATTGCCATACTCAATGACGGCACCATCATGACCATTTCCAAGGACAGAGTGAAGCCATCTCCAGTTCCTGATTCCTGGAAGCTCAATGAGATTTTTGCCACTGGTGTGGTGCTTGGTACCTACCTTGCAGTCATGACTGTTGTCTTCTTCTGGGCTGCTTATGCATCTGATTTCTTCCCAGAGAAATTCGGTGTTAGATCTATTAAGGGTAACAAGGATGAGCTAACTGCCGCTGTTTACCTTCAAGTGAGTATAGTGAGTCAGGCTCTCATCTTCGTCACTCGTTCAAGGAGCTGGTCTTATGTTGAACGCCCTGGTCTCTTGCTTCTTTCCGCATTTTTTATTGCACAACTGATTGCCACCATAATAGCTGTGTATGCAAATTGGGGATTTGCAAGGATGAAAGGAATTGGGTGGGGCTGGGCAGGTGTGATTTGGATATACAGTATCATCTTCTACATTCCTTTGGATATACTCAAGTTCATTACCCGTTATGCATTGAGTGGCAAGGCATGGAACAACATTACTGAGACCAAGACTGCTTTCACGACAAAGAAAGACTATGGAAGGGGAGAGCGAGAGGCACAATGGGCTACAGCTCAGCGCACACTTCATGGGTTGAATCCTCCTGATACAGATAGCATCTTGAAAGACAAGACCGACTACAGAGAATTGTCTGAAATTGCTGAACAGGCAAGGAAACGTGCTGAAGTTGCAAGGTTAAGGGAGCTTCACACACTGAAGGGGCACGTGGAGTCTGTGGTGAAACTCAAGGGACTTGATATTGAGACAATTCAGCAGCACTACACCGTTTAA 2817 0.4654 MGSLEEIKKETVDLERIPVDEVFRELKCSKEGLTNEEGQKRLEESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIMTLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWNEQDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNAGDEVYSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIVVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLVEVFEKDVDKDMVILLGARASRVENQDAIDACIVGMLGDPKEARDGIQEVHFLPFNPVDKRTAITYIDSAGNWHRVSKGAPEQIIELCNLRGDVLKKAHAIIDKFADRGLRSLAVARQEVPEKTKEGAGGPWQFVGLLPLFDPPRHDSAETIKQALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKYDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLNEIFATGVVLGTYLAVMTVVFFWAAYASDFFPEKFGVRSIKGNKDELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLLSAFFIAQLIATIIAVYANWGFARMKGIGWGWAGVIWIYSIIFYIPLDILKFITRYALSGKAWNNITETKTAFTTKKDYGRGEREAQWATAQRTLHGLNPPDTDSILKDKTDYRELSEIAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1749 938 Gene3D - 119 203 - -
Dere12g1749 938 FunFam ATPase 4 plasma membrane-type 560 802 - -
Dere12g1749 938 Coils Coil 889 909 - -
Dere12g1749 938 SMART Cation_ATPase_N_a_2 13 74 IPR004014 -
Dere12g1749 938 NCBIfam plasma-membrane proton-efflux P-type ATPase 42 793 IPR006534 GO:0008553|GO:0016020|GO:0120029
Dere12g1749 938 Pfam haloacid dehalogenase-like hydrolase 312 589 - -
Dere12g1749 938 FunFam Plasma membrane ATPase 328 475 - -
Dere12g1749 938 Pfam E1-E2 ATPase 118 295 - -
Dere12g1749 938 ProSitePatterns E1-E2 ATPases phosphorylation site. 318 324 IPR018303 -
Dere12g1749 938 SFLD p-type atpase 298 627 IPR044492 -
Dere12g1749 938 NCBIfam HAD-IC family P-type ATPase 550 662 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1749 938 NCBIfam HAD-IC family P-type ATPase 88 336 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1749 938 SFLD C1.7: P-type atpase like 298 627 - -
Dere12g1749 938 PRINTS P-type cation-transporting ATPase superfamily signature 166 180 - -
Dere12g1749 938 PRINTS P-type cation-transporting ATPase superfamily signature 575 594 - -
Dere12g1749 938 PRINTS P-type cation-transporting ATPase superfamily signature 470 481 - -
Dere12g1749 938 PRINTS P-type cation-transporting ATPase superfamily signature 316 330 - -
Dere12g1749 938 PRINTS P-type cation-transporting ATPase superfamily signature 598 610 - -
Dere12g1749 938 PRINTS P-type cation-transporting ATPase superfamily signature 492 502 - -
Dere12g1749 938 SUPERFAMILY Calcium ATPase, transduction domain A 119 216 IPR008250 -
Dere12g1749 938 CDD P-type_ATPase_H 32 828 IPR006534 GO:0008553|GO:0016020|GO:0120029
Dere12g1749 938 FunFam Plasma membrane ATPase 119 203 - -
Dere12g1749 938 Gene3D - 328 475 IPR023299 GO:0000166
Dere12g1749 938 Gene3D - 887 938 - -
Dere12g1749 938 Gene3D - 81 802 - -
Dere12g1749 938 FunFam Plasma membrane ATPase 468 623 - -
Dere12g1749 938 PRINTS H+-transporting ATPase (proton pump) signature 432 450 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1749 938 PRINTS H+-transporting ATPase (proton pump) signature 606 631 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1749 938 PRINTS H+-transporting ATPase (proton pump) signature 547 563 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1749 938 PRINTS H+-transporting ATPase (proton pump) signature 575 591 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1749 938 PRINTS H+-transporting ATPase (proton pump) signature 747 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1749 938 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 834 IPR023298 -
Dere12g1749 938 Gene3D - 313 612 IPR023214 -
Dere12g1749 938 PANTHER CALCIUM-TRANSPORTING ATPASE 15 870 - -
Dere12g1749 938 SUPERFAMILY HAD-like 312 622 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1749 Dere-ChrDere12 30083792 30088622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1749 3 938 Primary Pumps ATPases AT2G07560 83.633 0.0 1608