Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1746 ATGATGAATGACGATGTCGTCTTCCTCCTCAATCCCACGAGGCCATGCTGCGTTACAACACACGTGCTATCTTCACCGCCACCTCTCGAAGGAATCGCCGCCGTGGTGGGCCAGCACGTGCTCTTTGGAGACAAACACTCCACAGCTACCACCACTACCTCCACCTCCACCTCCACCTCCACCACCAGCAACAACAACCTCAACAGCTCAAAAGCGATGATGTCGGTGCCGAAGAGAGCCGACAAAAGTACAACGGGTGGGAGTCTGTCGGTGAGCAAGAGCTACAGGGGAGTGAGGAAGAGGCCGTGGGGGAGGTGGTCGGCGGAGATACGTGACCGAATCGGGCGGTGCAGGCACTGGCTGGGGACGTTCGACACGGCGGAGGAGGCGGCGCGTGCCTATGACGCGGCCGCGAGGCGACTGAGAGGCGCAAAGGCGAGGACCAACTTCGAGATACCTTCCGTGTTGCCACTGTCGTCGCCGTCTTCGTCGTCTTCAAATTCGTATTCGGAAGGGAAACTTAAGGGGAAGGGTGTGGGGAATAGTAGAAAGTGTTGTGTGGTTAACTCTGTAGCTCAATTGTTCAGTGTAGTGCCTGAGGTCGTGAGAGAGGGGAATCATAGGGAGAAAACTGGTTCTGGGTTTGGTAATAATATGGAGCTAGACTTGAAGCTAGCAATGGACTTTGGTAGTGGAGGGCCCACTAGAATGACTCGGTTTTCAACATTTAAGGACTCCGTCGCTAAACGTCTGGTGATTCTCCTTGACCAATATCATTTTCCGAAGTGTGTCCGCTTGTGCAGTAATACTGCGGAAAGTTCAGTGGAAGTACATGGGTTGAGTAAGCTTGCGTCAAAAAGTGTACAAACTGGGACTTTTATTCCCCACCTTCATGCATTTTTGGCAGTAGCTGCAGCTGCAGTTGCAGGGAGATTGAGCTTCCAAGCCTGTAATACCAACGCCAATCGGCATCATCCTCCTCCTCCTCGAGTAGTACAAGATAAAGGAAAATGTAAGAAACGAAAATCAGATCATATTGTCACCATGGTTAAAGGTGAAGACAGAACTACAAATCTTGAGGAACTGGGGGGAAAAAATAAACCAAAACTGTTCAATTATCTGCTGAACATGTGA 1134 0.5097 MMNDDVVFLLNPTRPCCVTTHVLSSPPPLEGIAAVVGQHVLFGDKHSTATTTTSTSTSTSTTSNNNLNSSKAMMSVPKRADKSTTGGSLSVSKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFEIPSVLPLSSPSSSSSNSYSEGKLKGKGVGNSRKCCVVNSVAQLFSVVPEVVREGNHREKTGSGFGNNMELDLKLAMDFGSGGPTRMTRFSTFKDSVAKRLVILLDQYHFPKCVRLCSNTAESSVEVHGLSKLASKSVQTGTFIPHLHAFLAVAAAAVAGRLSFQACNTNANRHHPPPPRVVQDKGKCKKRKSDHIVTMVKGEDRTTNLEELGGKNKPKLFNYLLNM 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1746 377 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Dere12g1746 377 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Dere12g1746 377 MobiDBLite consensus disorder prediction 48 90 - -
Dere12g1746 377 MobiDBLite consensus disorder prediction 154 176 - -
Dere12g1746 377 Gene3D AP2/ERF domain 93 152 IPR036955 GO:0003700|GO:0006355
Dere12g1746 377 FunFam Ethylene-responsive transcription factor 2 93 152 - -
Dere12g1746 377 MobiDBLite consensus disorder prediction 48 73 - -
Dere12g1746 377 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Dere12g1746 377 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 66 255 - -
Dere12g1746 377 Coils Coil 127 147 - -
Dere12g1746 377 SUPERFAMILY DNA-binding domain 94 151 IPR016177 GO:0003677
Dere12g1746 377 CDD AP2 93 152 IPR001471 GO:0003700|GO:0006355
Dere12g1746 377 MobiDBLite consensus disorder prediction 154 172 - -
Dere12g1746 377 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Dere12g1746 377 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1746 Dere-ChrDere12 30067722 30071774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1746 7 157 AP2-EREBP Transcription Factor Family AT1G80580 52.980 3.47e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g1746 AP2 5.9e-15 CL0081