Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1709 ATGAATCACAGAGTTTGCGTCGATAGAAATGAAAAAAGAAAAGGACTTGCGGGAGGTTCTCTTCTCCTCTCACGGCACTGCGAATTTGAAGTCAATTTCATAGTTGATATGGAAGAAGATGATGACTACGTGGAGTACGTGCCCGTGGCCAAGCGCAGGGCAATGGAGGCTCAGAAGATTCTTCAGCGAAAAGGGAAATCTTCGCCCGCATTTGATGACGATTTGGAGAAATCAAGAGTGGCTGAAGCTAAACCGAGTCTTCTGGTTATGGCGTCCCAGTTGAAGCGGGATCAACCTGAGATTAGTCCGACAGAGCAGATAGTTCAACAGGAGAAGGAGATGATTGAGAACTTATCGGATCGCAAAACCCTAATGTCTGTTCGAGAATTGGCTAAGGGAATCGTCTATACGGAGCCTTTGCGTACGGGATGGAAGCCACCTTTACCCATTAGAAGAATGTCTAAAAAGGAATGCGATTTGATTCGGAAGCAGTGGCATATAATAGTCGATGGTGAAGACATCCCACCCCCAATTAAGAATTTCAAAGATATGAGGTTTCCCGAGCCAATTTTGAAGAAGTTGAAAGCTAAAGGGATTGTGCAACCAACACCGATTCAAGTGCAAGGCCTTCCTGTTATCTTATCTGGGAGGGATATGATTGGGATTGCATTCACAGGATCAGGGAAAACTTTGGTCTTTGTGTTGCCAATGATCATGGTGGCATTGCAGGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTTGGTTTGATTGTTTGCCCATCAAGGGAATTGGCTAGACAGACTTATGAAGTGGTTGAACAGTTCTTGATACCTTTAAGAGAAGCTGGATATCCTGAACTTAGGCCTTTGCTTTGTATTGGTGGAGTGGATATGAGATCACAGCTTGAGGTTGTGAAGAAGGGCGTTCATATCGTTGTTGCCACCCCTGGGAGGTTAAAGGATATGTTGGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACGTTAGATGAGGCTGATAGATTGGTGGATTTGGGATTTGAAGATGATATAAGAGAAGTATTTGATCATTTCAAGGCTCAAAGGCAGACTCTCTTATTCTCTGCCACTATGCCCACCAAAATTCAGAATTTTGCTAGAAGTGCTTTAGTGAAACCTGTTATTGTTAATGTGGGGCGAGCAGGTGCAGCAAATCTTGATGTAATCCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGCCTGCAAAAAACCCCACCTCCGGTTTTAATATTCTGCGAGAACAAGGCAGATGTGGATGACATTCATGAATATCTGCTTTTGAAAGGAGTGGAAGCCGTGGCTATTCATGGAGGCAAAGATCAGGAAGAGAGAGAGTATGCCATTGCATCATTTAAGTCTGGAACGAAAGATGTTTTGGTTGCAACTGATGTTGCATCCAAGGGGTTGGATTTTCCGGATATTCAGCATGTCATTAATTATGACATGCCTGCTGAAATTGAAAATTATGTTCATAGGATTGGACGAACTGGAAGATGTGGTAAAACGGGCATAGCAACAACATTCATAAACAAGAATCAAAGTGAGACAACCTTGCTTGATTTGAAACATCTGTTGCAAGAAGCAAAACAACGTATTCCCCCAGTTCTAGCGGAGCTGAATGATCCAATGGAGGATAATGAAGAAATCACAGATAAAAGTGGGGTCAAGGGTTGTGCATATTGTGGTGGGCTTGGTCATCGTATTCGTGATTGTCCCAAACTGGAACATCAGAAGAGCATGGCGATTGCAAATAATAGAAGGGATTATTTTGGTTCTGGTGGATATAGAGGAGAAATATGA 1875 0.4251 MNHRVCVDRNEKRKGLAGGSLLLSRHCEFEVNFIVDMEEDDDYVEYVPVAKRRAMEAQKILQRKGKSSPAFDDDLEKSRVAEAKPSLLVMASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGIVYTEPLRTGWKPPLPIRRMSKKECDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVALQEEIMMPIVPGEGPFGLIVCPSRELARQTYEVVEQFLIPLREAGYPELRPLLCIGGVDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIASFKSGTKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1709 624 Gene3D - 148 398 IPR027417 -
Dere12g1709 624 SMART ultradead3 198 409 IPR014001 -
Dere12g1709 624 Pfam Zinc knuckle 582 598 IPR001878 GO:0003676|GO:0008270
Dere12g1709 624 Coils Coil 536 556 - -
Dere12g1709 624 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 565 IPR001650 -
Dere12g1709 624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 394 IPR014001 -
Dere12g1709 624 Pfam Helicase conserved C-terminal domain 418 525 IPR001650 -
Dere12g1709 624 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 171 565 - -
Dere12g1709 624 CDD SF2_C_DEAD 406 534 - -
Dere12g1709 624 SMART c2hcfinal6 582 598 IPR001878 GO:0003676|GO:0008270
Dere12g1709 624 FunFam Probable ATP-dependent RNA helicase DDX41 404 566 - -
Dere12g1709 624 SMART helicmild6 444 525 IPR001650 -
Dere12g1709 624 SUPERFAMILY Retrovirus zinc finger-like domains 582 603 IPR036875 GO:0003676|GO:0008270
Dere12g1709 624 Gene3D - 404 566 IPR027417 -
Dere12g1709 624 FunFam Probable ATP-dependent RNA helicase DDX41 146 395 - -
Dere12g1709 624 CDD DEADc_DDX41 190 395 IPR044113 GO:0000398|GO:0003724|GO:0005524
Dere12g1709 624 Pfam DEAD/DEAH box helicase 203 382 IPR011545 GO:0003676|GO:0005524
Dere12g1709 624 ProSiteProfiles Zinc finger CCHC-type profile. 583 598 IPR001878 GO:0003676|GO:0008270
Dere12g1709 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 540 IPR027417 -
Dere12g1709 624 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1709 Dere-ChrDere12 29470661 29474312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1709 151 560 Eukaryotic Initiation Factors Gene Family AT3G13920 29.710 2.85e-56 194