Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1690 ATGGCCATTATACCCCTCTCTTTTCAACCTTATCTGCATCCACCCTCCGCTTATTCGTCCTCTTCTTCTTCTTCTTCTTCTTACTTCTGTGGGGGTGTCCATTTCCGGACCGATAAGAACTTCATTTCTATCCATACTCCTTCGCATTTTTCTTCTTCTACGTTAGATACAAAGGCCTCCGCGAGGCGCTTTCGAACGGCGATTGCTGCTTCTCGGGACTATTATGCTACGCTTGGAGTTCCCAAATCTGCGACTGGCAAGGAAATTAAAGCGGCTTATCGAAGGTTAGCTCGTCAGTACCATCCTGACGTGAACAAGGAACCTGGAGCTACTGATAAGTTTAAAGAAATCAGTGCTGCATATGAGGTGCTATCAGATGATAAGAAGAGGGCTTTGTATGATCGATATGGAGAGGTTGGAGTTAAGAGTACGGTGGGAGGAGGATCAAATGCTTATACGACTAATCCATTTGATTTGTTTGAGACAATCTTTGGACCAAGTATGGGTGGCTTCCCTGGTATGGATTCAACTGGATTTGGAACACGCCGCCGTAGTACTGTTACTAAGGGTGAAGACATTCGTTATGATATTTCCTTGGAATTTTCTGAGGCAATTTTTGGAGCAGAGAAAGAATTTGAGCTTTCCCATTTGGAAAAATGCGAAGTTTGTGGTGGTACTGGAGCAAAAATAGGCTCCAAGATGAGAATATGTTCGACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGTTTGTTCTCACAGGTTTCGGTATGTCCAAAATGTGGAGGGGATGGTGAAGTCATATCTGAATTTTGCCGGAAATGTAGTAGTGAAGGACGTATACGGGTTAAGAAAAATATTAAAGTTAAAGTTCCTTCTGGGGTTAGCTCAGGCAGTATTCTGAGAGTTGCTGGGGAGGGTGATGCTGGACCAAGAGGGGGCCCTCCCGGAGATCTGTATGTATATCTCGTAGTGGAAGAGATACCAGGAATTCAAAGAGATGGCATTAACCTCTGTTCAACAATATCAATCAGCTATCTAGATGCCATACAAGGGGCTGTCATCAAGGTAAATACAGTTGAAGGCATTTCTGAACTACAAATACCCGCGGGTACTCAACCTGGAGATGTCCTTGTCCTTGAAAGGAATGGTGCACCAAAATTAAACAAACCATCAATACGTGGTGATCACTTATTTACAGTTAAAGTCACCATACCAAAACGAATCAGTACAAAGGAGCGTGAGTTGCTTGAAGAACTTGCTTCACTAGGCAAGACAACGAGCAGCCGTTCAAAACCGCATACTAGAACTCACTCTTCCACAGGAAGCACAGAAGGTCCTGCAGCTCGAAGTGCTGAAAGTTCAACAACAGTTGAAGAAAAAGCTGAACAATCAGAAGACCAAGATGACCTATGGAAGAAGTTAAAGGATTTTGCTGGGTCTGTGGCGAATGGAGCTTTGAAGTGGCTAAAAGATAATCTGTAG 1500 0.4393 MAIIPLSFQPYLHPPSAYSSSSSSSSSYFCGGVHFRTDKNFISIHTPSHFSSSTLDTKASARRFRTAIAASRDYYATLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATDKFKEISAAYEVLSDDKKRALYDRYGEVGVKSTVGGGSNAYTTNPFDLFETIFGPSMGGFPGMDSTGFGTRRRSTVTKGEDIRYDISLEFSEAIFGAEKEFELSHLEKCEVCGGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPKCGGDGEVISEFCRKCSSEGRIRVKKNIKVKVPSGVSSGSILRVAGEGDAGPRGGPPGDLYVYLVVEEIPGIQRDGINLCSTISISYLDAIQGAVIKVNTVEGISELQIPAGTQPGDVLVLERNGAPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELASLGKTTSSRSKPHTRTHSSTGSTEGPAARSAESSTTVEEKAEQSEDQDDLWKKLKDFAGSVANGALKWLKDNL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1690 499 MobiDBLite consensus disorder prediction 427 475 - -
Dere12g1690 499 CDD DnaJ 73 126 IPR001623 -
Dere12g1690 499 FunFam Putative Mitochondrial DnaJ chaperone 278 326 - -
Dere12g1690 499 ProSiteProfiles Zinc finger CR-type profile. 207 289 IPR001305 GO:0031072|GO:0051082
Dere12g1690 499 SUPERFAMILY Chaperone J-domain 69 179 IPR036869 -
Dere12g1690 499 Gene3D - 190 326 - -
Dere12g1690 499 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 30 435 - -
Dere12g1690 499 MobiDBLite consensus disorder prediction 427 460 - -
Dere12g1690 499 FunFam Chaperone protein dnaJ A6 chloroplastic 70 176 - -
Dere12g1690 499 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Dere12g1690 499 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 422 IPR008971 GO:0006457|GO:0051082
Dere12g1690 499 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 207 287 IPR036410 -
Dere12g1690 499 ProSiteProfiles dnaJ domain profile. 73 137 IPR001623 -
Dere12g1690 499 Gene3D - 220 284 - -
Dere12g1690 499 Pfam DnaJ central domain 220 284 IPR001305 GO:0031072|GO:0051082
Dere12g1690 499 Hamap Chaperone protein DnaJ [dnaJ]. 70 483 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Dere12g1690 499 NCBIfam molecular chaperone DnaJ 73 427 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Dere12g1690 499 FunFam Chaperone protein dnaJ A6 chloroplastic 220 284 - -
Dere12g1690 499 Pfam DnaJ domain 73 134 IPR001623 -
Dere12g1690 499 SMART dnaj_3 72 129 IPR001623 -
Dere12g1690 499 FunFam Molecular chaperone Hsp40/DnaJ family protein 336 428 - -
Dere12g1690 499 Pfam DnaJ C terminal domain 193 411 IPR002939 -
Dere12g1690 499 CDD DnaJ_zf 220 284 IPR001305 GO:0031072|GO:0051082
Dere12g1690 499 PRINTS DnaJ domain signature 75 93 IPR001623 -
Dere12g1690 499 PRINTS DnaJ domain signature 109 129 IPR001623 -
Dere12g1690 499 PRINTS DnaJ domain signature 93 108 IPR001623 -
Dere12g1690 499 PRINTS DnaJ domain signature 129 148 IPR001623 -
Dere12g1690 499 MobiDBLite consensus disorder prediction 461 475 - -
Dere12g1690 499 CDD DnaJ_C 191 414 - -
Dere12g1690 499 Gene3D - 336 428 - -
Dere12g1690 499 SUPERFAMILY HSP40/DnaJ peptide-binding domain 188 340 IPR008971 GO:0006457|GO:0051082
Dere12g1690 499 Gene3D DnaJ domain 69 175 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1690 Dere-ChrDere12 29349339 29356410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1690 72 136 C2H2 Transcription Factor Family AT1G74250 47.887 3.81e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1690 12 29349339 29356410 Dere12g1690 12 29349339 29356410 ECH